Construct: ORF ccsbBroadEn_05306
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017484.1_s300c1, BRDN0000397319
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC57 (255252)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 255252 | LRRC57 | leucine rich repeat contain... | NM_153260.3 | 100% | 100% | |
| 2 | human | 255252 | LRRC57 | leucine rich repeat contain... | XM_011521424.3 | 96.1% | 94.5% | (many diffs) |
| 3 | human | 255252 | LRRC57 | leucine rich repeat contain... | XM_011521423.3 | 95.4% | 95.3% | (many diffs) |
| 4 | mouse | 66606 | Lrrc57 | leucine rich repeat contain... | NM_001159612.1 | 88.9% | 95.3% | (many diffs) |
| 5 | mouse | 66606 | Lrrc57 | leucine rich repeat contain... | NM_025657.3 | 88.9% | 95.3% | (many diffs) |
| 6 | mouse | 66606 | Lrrc57 | leucine rich repeat contain... | XM_006500016.3 | 88.9% | 95.3% | (many diffs) |
| 7 | mouse | 66606 | Lrrc57 | leucine rich repeat contain... | NM_001159609.1 | 80.5% | 86.3% | (many diffs) |
| 8 | mouse | 66606 | Lrrc57 | leucine rich repeat contain... | NM_001159610.1 | 75.6% | 81.1% | (many diffs) |
| 9 | mouse | 66606 | Lrrc57 | leucine rich repeat contain... | XR_374504.3 | 53.5% | (many diffs) | |
| 10 | mouse | 66606 | Lrrc57 | leucine rich repeat contain... | NR_027510.1 | 32.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 783
- ORF length:
- 717
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG AAACAGTGCG CTCCGCGCTC ATGTGGAAAC GGCGCAGAAA ACTGGTGTCT 121 TTCAGCTTAA GGACCGAGGG CTGACCGAGT TCCCCGCAGA CTTGCAGAAG CTGACGAGCA 181 ATCTCAGGAC CATCGACTTG TCCAACAACA AGATCGAAAG CCTACCGCCT TTGCTGATAG 241 GAAAGTTCAC TCTGCTGAAG AGCCTCTCCC TGAACAACAA CAAACTGACT GTTCTGCCTG 301 ATGAGATATG CAATCTGAAA AAACTAGAGA CGCTAAGCCT AAACAACAAT CACCTTAGAG 361 AGCTGCCGTC TACCTTTGGG CAACTCTCTG CCCTCAAGAC CCTGAGCCTC TCTGGGAACC 421 AACTGGGAGC ATTACCTCCC CAACTTTGTA GCCTACGGCA CCTGGATGTG ATGGATCTCT 481 CTAAGAACCA GATTCGAAGT ATACCTGACT CAGTGGGAGA GCTGCAAGTC ATCGAACTCA 541 ACCTCAACCA GAATCAGATA TCTCAGATCT CAGTGAAGAT ATCTTGCTGT CCACGCCTTA 601 AAATTCTTCG CCTGGAAGAG AATTGTCTTG AGCTCAGCAT GCTTCCCCAG AGCATCCTCA 661 GTGATTCCCA GATCTGTCTG CTTGCTGTGG AAGGCAATCT TTTTGAAATA AAGAAACTTC 721 GAGAACTGGA AGGCTATGAT AAGTACATGG AGAGGTTCAC AGCCACCAAG AAGAAGTTTG 781 CGTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 841 gcaacgaac