Construct: ORF ccsbBroadEn_05375

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008970.1_s300c1, BRDN0000397322
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ENDOV (284131)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 284131 ENDOV endonuclease V NM_001164638.2 100% 100%
2 human 284131 ENDOV endonuclease V XM_005257246.3 93.7% 91% (many diffs)
3 human 284131 ENDOV endonuclease V NM_001164637.3 88.3% 88.6% 704_709delCACTTT;711_712ins87
4 human 284131 ENDOV endonuclease V NM_001352760.2 85.4% 85.4% 227_361del
5 human 284131 ENDOV endonuclease V NM_001352761.2 80.9% 78.2% (many diffs)
6 human 284131 ENDOV endonuclease V XM_006721837.3 80.4% 77.8% (many diffs)
7 human 284131 ENDOV endonuclease V XM_011524663.1 78.1% 75.5% (many diffs)
8 human 284131 ENDOV endonuclease V XM_011524662.1 77.7% 75.2% (many diffs)
9 human 284131 ENDOV endonuclease V XM_017024511.1 77.5% 75% (many diffs)
10 human 284131 ENDOV endonuclease V XM_011524661.2 76.5% 74% (many diffs)
11 human 284131 ENDOV endonuclease V NM_173627.5 75.5% 75.7% 227_361del;839_844delCACTTT;846_847ins87
12 human 284131 ENDOV endonuclease V XM_011524660.1 74.1% 71.6% (many diffs)
13 human 284131 ENDOV endonuclease V XM_011524669.2 72.9% 73.1% (many diffs)
14 human 284131 ENDOV endonuclease V XM_011524657.1 67.4% 65.1% (many diffs)
15 human 284131 ENDOV endonuclease V XM_011524671.2 66.3% 64% (many diffs)
16 human 284131 ENDOV endonuclease V XM_011524656.1 65.8% 63.5% (many diffs)
17 human 284131 ENDOV endonuclease V XM_011524655.1 65.5% 63.2% (many diffs)
18 human 284131 ENDOV endonuclease V XM_017024512.1 65.1% 57.5% (many diffs)
19 human 284131 ENDOV endonuclease V XM_011524670.1 64% 61.8% (many diffs)
20 human 284131 ENDOV endonuclease V XM_011524658.2 61.3% 61.4% (many diffs)
21 human 284131 ENDOV endonuclease V XM_017024510.1 61.1% 60.9% (many diffs)
22 human 284131 ENDOV endonuclease V XM_011524664.2 56.4% 48% (many diffs)
23 human 284131 ENDOV endonuclease V XM_011524666.1 56.4% 48% (many diffs)
24 human 284131 ENDOV endonuclease V XM_011524667.2 56.4% 48% (many diffs)
25 human 284131 ENDOV endonuclease V XM_017024508.1 56.4% 48% (many diffs)
26 human 284131 ENDOV endonuclease V XM_017024509.1 56.4% 48% (many diffs)
27 human 284131 ENDOV endonuclease V NR_148042.2 26.3% (many diffs)
28 human 284131 ENDOV endonuclease V NR_148043.2 23.9% (many diffs)
29 human 284131 ENDOV endonuclease V NR_148045.2 23.7% (many diffs)
30 human 284131 ENDOV endonuclease V NR_148041.2 22.9% (many diffs)
31 human 284131 ENDOV endonuclease V NR_148044.2 22.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
858
ORF length:
792
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCTGGAGGCG GCGGGAGGGC CGCCGGAGGA AACGCTGTCA CTGTGGAAAC
121GGGAGCAAGC TCGGCTGAAG GCCCACGTCG TAGACCGGGA CACCGAGGCG TGGCAGCGAG
181ACCCCGCCTT CTCGGGTCTG CAGAGGGTCG GGGGCGTTGA CGTGTCCTTC GTGAAAGGGG
241ACAGTGTCCG CGCTTGTGCT TCCCTGGTGG TGCTCAGCTT CCCTGAGCTC GAGGTCCTTC
301TTGTGGATGG AAACGGGGTA CTCCACCACC GAGGCTTTGG GGTGGCCTGC CACCTTGGCG
361TCCTTACAGA CCTGCCGTGT GTTGGGGTGG CCAAGAAACT TCTGCAGGTG GATGGGCTGG
421AGAACAACGC CCTGCACAAG GAGAAGATCC GACTCCTGCA GACTCGAGGA GACTCATTCC
481CTCTGCTGGG AGACTCTGGG ACTGTCCTGG GAATGGCCCT GAGGAGCCAC GACCGCAGCA
541CCAGGCCCCT CTACATCTCC GTGGGCCACA GGATGAGCCT GGAGGCCGCT GTGCGCCTGA
601CTTGCTGCTG CTGCAGGTTC CGGATCCCAG AGCCCGTGCG CCAGGCTGAC ATCTGCTCCC
661GAGAGCACAT CCGCAAGTCG CTGGGACTCC CCGGGCCACC CACACCGAGG AGCCCGAAGG
721CGCAGAGGCC AGTGGCATGC CCCAAAGGAG ACTCCGGAGA GTCCTCAGGT GAGGGCCAGC
781CCCCACAGGA CCACAGCCCA GGCCCCAGGA CAGCCCCAAG GCCAGGCTCC CAGGAGCAGG
841CGGGCAAGGA CTGGCAGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
901gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)