Transcript: Human XM_017024509.1

PREDICTED: Homo sapiens endonuclease V (ENDOV), transcript variant X11, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ENDOV (284131)
Length:
2362
CDS:
1221..2120

Additional Resources:

NCBI RefSeq record:
XM_017024509.1
NBCI Gene record:
ENDOV (284131)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017024509.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000051059 GTTGACGTGTCCTTCGTGAAA pLKO.1 488 5UTR 100% 4.950 6.930 N ENDOV n/a
2 TRCN0000420704 GGTCCTTCTTGTGGATGGAAA pLKO_005 1334 CDS 100% 4.950 3.465 N ENDOV n/a
3 TRCN0000436957 AGGAGACTCATTCCCTCTGCT pLKO_005 1508 CDS 100% 2.640 1.848 N ENDOV n/a
4 TRCN0000051060 CCTGCCACCTTGGCGTCCTTA pLKO.1 1387 CDS 100% 0.000 0.000 N ENDOV n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017024509.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05375 pDONR223 100% 56.4% 48% None (many diffs) n/a
2 ccsbBroad304_05375 pLX_304 0% 56.4% 48% V5 (many diffs) n/a
3 TRCN0000471000 AGTCGCACCAAACGCTTGGGTGCG pLX_317 38.3% 56.4% 48% V5 (many diffs) n/a
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