Construct: ORF ccsbBroadEn_05392

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001584.1_s300c1, BRDN0000393800
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EOGT (285203)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285203 EOGT EGF domain specific O-linke... NM_173654.3 99.9% 100% 465A>G
2 human 285203 EOGT EGF domain specific O-linke... NM_001278689.2 83.9% 84% 465A>G;832_1083del
3 human 285203 EOGT EGF domain specific O-linke... XM_005264743.2 83.9% 84% 465A>G;832_1083del
4 human 285203 EOGT EGF domain specific O-linke... XM_017006205.1 83.9% 84% 465A>G;832_1083del
5 human 285203 EOGT EGF domain specific O-linke... XM_017006206.1 83.9% 84% 465A>G;832_1083del
6 human 285203 EOGT EGF domain specific O-linke... XM_011533603.1 81.3% 81.4% 465A>G;832_1134del
7 human 285203 EOGT EGF domain specific O-linke... XM_017006204.1 81.3% 81.4% 465A>G;832_1134del
8 human 285203 EOGT EGF domain specific O-linke... XM_011533599.1 81.2% 81.2% 465A>G;832_1137del
9 human 285203 EOGT EGF domain specific O-linke... XM_011533600.1 81.2% 81.2% 465A>G;832_1137del
10 human 285203 EOGT EGF domain specific O-linke... XM_011533602.1 81.2% 81.2% 465A>G;832_1137del
11 human 285203 EOGT EGF domain specific O-linke... XM_017006208.1 64.8% 64.1% (many diffs)
12 human 285203 EOGT EGF domain specific O-linke... XM_017006207.1 56.3% 36.3% (many diffs)
13 human 285203 EOGT EGF domain specific O-linke... XM_017006209.1 50.1% 38.8% (many diffs)
14 human 285203 EOGT EGF domain specific O-linke... NR_103826.2 28.8% (many diffs)
15 mouse 101351 Eogt EGF domain-specific O-linke... NM_175313.4 71.2% 72.6% (many diffs)
16 mouse 101351 Eogt EGF domain-specific O-linke... XM_006505258.3 71.2% 72.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1395
ORF length:
1329
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT AATGTTGTTT GTCTTTGGAG TCTTACTTCA TGAAGTCTCA CTGAGTGGTC
121AGAATGAAGC TCCTCCTAAT ACTCACAGCA TTCCAGGCGA ACCTCTGTAT AACTATGCCA
181GCATCCGCTT GCCAGAGGAG CACATTCCCT TCTTTTTGCA CAACAATAGG CATATTGCCA
241CTGTCTGTAG GAAAGACTCT CTTTGTCCAT ATAAGAAACA CCTAGAGAAG CTAAAGTACT
301GCTGGGGTTA TGAGAAATCC TGCAAACCAG AGTTCAGGTT TGGTTACCCA GTTTGCAGCT
361ATGTCGACAT GGGATGGACG GACACTCTTG AGTCAGCTGA GGACATATTT TGGAAACAAG
421CTGACTTTGG ATATGCCAGA GAGAGGCTGG AGGAGATGCA TGTGCTCTGT CAGCCTAAGG
481AAACGAGTGA CTCAAGTCTG GTGTGTTCCC GTTATCTTCA GTACTGCAGG GCAACCAATC
541TCTATCTTGA TTTAAGAAAC ATCAAGAGAA ATCATGACAG ATTTAAGGAG GACTTTTTCC
601AGAGTGGTGA AATTGGAGGG CACTGTAAAC TTGACATCCG TACATTGACG TCTGAAGGTC
661AGCGCAAAAG CCCTCTGCAG TCATGGTTTG CTGAGCTACA AAGCTATACT CAGCTCAACT
721TCAGACCTAT AGAAGATGCT AAATGTGACA TTGTCATTGA AAAACCAACA TATTTCATGA
781AATTAGATGC AGGTGTTAAC ATGTATCACC ACTTCTGTGA TTTCATCAAT CTTTATATTA
841CTCAGCACGT TAATAACTCA TTCAGTACTG ACGTGTACAT CGTGATGTGG GACACCGATG
901GAAAAATTCG AGTCACCATT CTTGCACGGA GCACAGAATA CCGGAAAATC CTTAACCAAA
961ATGAGCTTGT AAATGCACTG AAAACAGTAT CTACATTTGA AGTCCAGATT GTTGATTACA
1021AGTATAGAGA ACTTGGGTTT TTAGATCAAC TAAGGATCAC ACACAACACG GACATATTTA
1081TTGGAATGCA TGGAGCTGGT CTGACCCATT TACTTTTCCT TCCAGACTGG GCTGCTGTAT
1141TTGAACTGTA CAACTGTGAA GATGAACGCT GTTACTTAGA CTTGGCCAGG CTGAGAGGCG
1201TTCACTACAT CACTTGGCGA CGGCAGAACA AAGTCTTTCC TCAGGATAAG GGCCACCATC
1261CAACCCTGGG GGAGCACCCG AAGTTCACCA ACTACTCTTT CGATGTAGAA GAATTTATGT
1321ATCTTGTCCT TCAGGCTGCA GACCACGTAT TGCAACACCC AAAGTGGCCA TTTAAGAAGA
1381AACATGATGA GCTATACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1441tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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