Construct: ORF ccsbBroadEn_05437

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016083.1_s300c1, BRDN0000393498
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAB7B (338382)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 338382 RAB7B RAB7B, member RAS oncogene ... NM_001164522.3 100% 100%
2 human 338382 RAB7B RAB7B, member RAS oncogene ... NM_177403.5 100% 100%
3 human 338382 RAB7B RAB7B, member RAS oncogene ... XM_006711288.4 89.8% 88.9% (many diffs)
4 human 338382 RAB7B RAB7B, member RAS oncogene ... NM_001304839.2 78.8% 78.8% 395_396ins126
5 mouse 226421 Rab7b RAB7B, member RAS oncogene ... NM_145509.3 85.4% 88.4% (many diffs)
6 mouse 226421 Rab7b RAB7B, member RAS oncogene ... XM_006529430.2 85.4% 88.4% (many diffs)
7 mouse 226421 Rab7b RAB7B, member RAS oncogene ... NM_001311096.1 68% 70.8% (many diffs)
8 mouse 226421 Rab7b RAB7B, member RAS oncogene ... XM_006529428.3 66.1% 68.4% (many diffs)
9 mouse 226421 Rab7b RAB7B, member RAS oncogene ... XM_006529433.3 54.9% 54.7% (many diffs)
10 mouse 226421 Rab7b RAB7B, member RAS oncogene ... XM_006529429.3 52.6% 54.8% (many diffs)
11 mouse 226421 Rab7b RAB7B, member RAS oncogene ... XM_006529431.3 42.5% 42.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
663
ORF length:
597
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TCCCCGGAAG AAGGTGGACC TGAAACTCAT TATCGTCGGA GCCATTGGTG
121TGGGAAAGAC CTCCCTCCTT CACCAATATG TGCACAAGAC GTTTTATGAG GAATACCAGA
181CCACACTGGG GGCCAGCATC CTCTCCAAGA TTATCATATT GGGTGACACA ACTTTGAAGT
241TACAGATCTG GGACACGGGC GGTCAGGAGC GGTTCCGCTC CATGGTGTCC ACGTTCTACA
301AGGGCTCCGA TGGCTGCATC CTAGCTTTTG ATGTCACCGA CCTGGAGTCT TTTGAAGCCC
361TGGATATCTG GCGGGGTGAT GTCCTGGCCA AGATTGTCCC CATGGAGCAG TCCTACCCCA
421TGGTGTTGTT GGGGAACAAG ATCGATCTGG CAGACCGGAA GGTACCCCAG GAAGTAGCTC
481AAGGCTGGTG TAGAGAGAAA GATATTCCTT ACTTTGAAGT CAGTGCCAAG AATGACATCA
541ATGTGGTGCA AGCGTTTGAG ATGCTGGCCA GTAGGGCTCT GTCGAGGTAC CAGAGCATCT
601TAGAAAATCA CCTCACAGAA TCCATCAAGC TCTCGCCAGA CCAGTCAAGG AGCAGATGCT
661GCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
721gcaacgaac

Download FASTA (ORF) (Full)