Construct: ORF ccsbBroadEn_05448
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004605.1_s300c1, BRDN0000397668
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC144NL (339184)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9720 | CCDC144A | coiled-coil domain containi... | XR_001752704.1 | 36.9% | (many diffs) | |
| 2 | human | 9720 | CCDC144A | coiled-coil domain containi... | XR_001752702.1 | 24.1% | (many diffs) | |
| 3 | human | 339184 | CCDC144NL | coiled-coil domain containi... | NR_164128.1 | 23.4% | 1_143del;740G>A;807_2829del | |
| 4 | human | 9720 | CCDC144A | coiled-coil domain containi... | XR_001752703.1 | 15.8% | (many diffs) | |
| 5 | human | 348254 | CCDC144CP | coiled-coil domain containi... | NR_023380.1 | 13.6% | (many diffs) | |
| 6 | human | 9720 | CCDC144A | coiled-coil domain containi... | NM_014695.3 | 13.4% | 10.5% | (many diffs) |
| 7 | human | 9720 | CCDC144A | coiled-coil domain containi... | XM_017025430.1 | 13% | 10.2% | (many diffs) |
| 8 | human | 9720 | CCDC144A | coiled-coil domain containi... | NR_130142.2 | 6.7% | (many diffs) | |
| 9 | human | 284047 | CCDC144B | coiled-coil domain containi... | NR_036647.1 | 6.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 729
- ORF length:
- 663
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CTCCTGGGGT GGAGAAAAGC GGGGAGGGGC TGGGGGGTCT CCGAAGCCGG 121 CAGTCTACGC CACGAGGAAG ACCCCTAGTG TTGGGAGCCA GGAGGACCAG TGGTACTTGG 181 ACTACCCGGG GGACCAGTGG TCCTTGGGCT TCTCCTACAG CTGGTGGAAG AACAGCGTCG 241 GCAGCGAGAG CAAGCACGGT GAGGGCGCCT TAGACCAGCT CCAGCACGAT GTCCGCCTGG 301 AAGATCTTGG CGAGCTCCAC AGAGCTGCCC GGTCGGGCGA CGTCCCTGGG GTGGAGCACG 361 TCTTGGCTCC TGGAGACACT GGCGTGGACA AGAGGGATAG GAAGAAGAGC ATTCAGCAAC 421 TAGTTCCTGA ATATAAGGAA AAACAGACAC CTGAAAGTCT TCCTCAAAAT AACAATCCAG 481 CTGCTCCAAG CCAGGCTGAA GGAGGAGAAG GAGGAGTCGC CTGTGGTACG GTGGAGCAGA 541 TGACGTGGCT CTGCAGCTTG CCTCATGCAG TTGGTGGTGG AGATGGAGAC CACAGCTCGA 601 CTGGAGCGGT AGGAGGGCAC CCACGGGGGC CTGGAGAGTA TTGTCATCTG CATGAGCAAA 661 GAGTTCATCA CCACATCTTT GCAAGAGGAA AAAGAAAGGG GAAGAATCAT GTGTCTAATG 721 TTGTAAGGTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 781 tttgttgcaa cgaac