Construct: ORF ccsbBroadEn_05510
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014055.1_s300c1, BRDN0000394366
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRTM3 (347731)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 347731 | LRRTM3 | leucine rich repeat transme... | NM_178011.5 | 100% | 100% | |
| 2 | mouse | 216028 | Lrrtm3 | leucine rich repeat transme... | NM_178678.4 | 91% | 97.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1812
- ORF length:
- 1743
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGTTTCAAT GTAATTAGGC TACTGAGCGG ATCAGCTGTA GCACTGGTTA 121 TAGCCCCCAC TGTCTTACTG ACAATGCTTT CTTCTGCCGA ACGAGGATGC CCTAAGGGCT 181 GTAGGTGTGA AGGCAAAATG GTATATTGTG AATCTCAGAA ATTACAGGAG ATACCCTCAA 241 GTATATCTGC TGGTTGCTTA GGTTTGTCCC TTCGCTATAA CAGCCTTCAA AAACTTAAGT 301 ATAATCAATT TAAAGGGCTC AACCAGCTCA CCTGGCTATA CCTTGACCAT AACCATATCA 361 GCAATATTGA CGAAAATGCT TTTAATGGAA TACGCAGACT CAAAGAGCTG ATTCTTAGTT 421 CCAATAGAAT CTCCTATTTT CTTAACAATA CCTTCAGACC TGTGACAAAT TTACGGAACT 481 TGGATCTGTC CTATAATCAG CTGCATTCTC TGGGATCTGA ACAGTTTCGG GGCTTGCGGA 541 AGCTGCTGAG TTTACATTTA CGGTCTAACT CCCTGAGAAC CATCCCTGTG CGAATATTCC 601 AAGACTGCCG CAACCTGGAA CTTTTGGACC TGGGATATAA CCGGATCCGA AGTTTAGCCA 661 GGAATGTCTT TGCTGGCATG ATCAGACTCA AAGAACTTCA CCTGGAGCAC AATCAATTTT 721 CCAAGCTCAA CCTGGCCCTT TTTCCAAGGT TGGTCAGCCT TCAGAACCTT TACTTGCAGT 781 GGAATAAAAT CAGTGTCATA GGACAGACCA TGTCCTGGAC CTGGAGCTCC TTACAAAGGC 841 TTGATTTATC AGGCAATGAG ATCGAAGCTT TCAGTGGACC CAGTGTTTTC CAGTGTGTCC 901 CGAATCTGCA GCGCCTCAAC CTGGATTCCA ACAAGCTCAC ATTTATTGGT CAAGAGATTT 961 TGGATTCTTG GATATCCCTC AATGACATCA GTCTTGCTGG GAATATATGG GAATGCAGCA 1021 GAAATATTTG CTCCCTTGTA AACTGGCTGA AAAGTTTTAA AGGTCTAAGG GAGAATACAA 1081 TTATCTGTGC CAGTCCCAAA GAGCTGCAAG GAGTAAATGT GATCGATGCA GTGAAGAACT 1141 ACAGCATCTG TGGCAAAAGT ACTACAGAGA GGTTTGATCT GGCCAGGGCT CTCCCAAAGC 1201 CGACGTTTAA GCCCAAGCTC CCCAGGCCGA AGCATGAGAG CAAACCCCCT TTGCCCCCGA 1261 CGGTGGGAGC CACAGAGCCC GGCCCAGAGA CCGATGCTGA CGCCGAGCAC ATCTCTTTCC 1321 ATAAAATCAT CGCGGGCAGC GTGGCGCTTT TCCTGTCCGT GCTCGTCATC CTGCTGGTTA 1381 TCTACGTGTC ATGGAAGCGG TACCCTGCGA GCATGAAGCA GCTGCAGCAG CGCTCCCTCA 1441 TGCGAAGGCA CAGGAAAAAG AAAAGACAGT CCCTAAAGCA AATGACTCCC AGCACCCAGG 1501 AATTTTATGT AGATTATAAA CCCACCAACA CGGAGACCAG CGAGATGCTG CTGAATGGGA 1561 CGGGACCCTG CACCTATAAC AAATCGGGCT CCAGGGAGTG TGAGATACCT TTATCAATGA 1621 ATGTGTCAAC CTTTCTGGCA TACGACCAGC CCACAATAAG TTACTGTGGG GTGCATCATG 1681 AACTTCTCTC CCATAAGTCC TTTGAAACGA ATGCACAGGA AGATACGATG GAAACACACC 1741 TAGAGACTGA GCTGGACCTG AGCACAATCA CAACAGCTGG CCGAATCAGT GACCATAAAC 1801 AGCAGCTAGC TTTGCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1861 caatttgttg caacgaac