Transcript: Mouse NM_178678.4

Mus musculus leucine rich repeat transmembrane neuronal 3 (Lrrtm3), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Lrrtm3 (216028)
Length:
3852
CDS:
543..2291

Additional Resources:

NCBI RefSeq record:
NM_178678.4
NBCI Gene record:
Lrrtm3 (216028)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_178678.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000193762 CTGTCTTACTGACAATGCTTT pLKO.1 604 CDS 100% 4.950 6.930 N Lrrtm3 n/a
2 TRCN0000173632 GAGTTCCAACAGAATCTCCTA pLKO.1 890 CDS 100% 2.640 2.112 N Lrrtm3 n/a
3 TRCN0000173701 CGCAGACTCAAAGAGTTGATT pLKO.1 867 CDS 100% 5.625 3.938 N Lrrtm3 n/a
4 TRCN0000194335 CTCTCCCATAAGTCCTTTGAA pLKO.1 2163 CDS 100% 5.625 3.938 N Lrrtm3 n/a
5 TRCN0000173974 GCTTGAGGAAGCTGCTTAGTT pLKO.1 1006 CDS 100% 5.625 3.938 N Lrrtm3 n/a
6 TRCN0000194116 GCTCACATTTATTGGACAAGA pLKO.1 1409 CDS 100% 4.950 3.465 N Lrrtm3 n/a
7 TRCN0000131077 GCCCAGAAACCTTGACTCTAA pLKO.1 2788 3UTR 100% 4.950 3.465 N LRRTM3 n/a
8 TRCN0000166364 CACACACACACACACACACAA pLKO.1 227 5UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178678.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05510 pDONR223 100% 91% 97.4% None (many diffs) n/a
2 ccsbBroad304_05510 pLX_304 0% 91% 97.4% V5 (many diffs) n/a
3 TRCN0000479720 CTTTCCGCTTTTATGCACTCAATT pLX_317 21.8% 91% 97.4% V5 (many diffs) n/a
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