Construct: ORF ccsbBroadEn_05532
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013258.1_s300c1, BRDN0000387002
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC172 (374355)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 374355 | CCDC172 | coiled-coil domain containi... | NM_198515.3 | 100% | 100% | |
| 2 | human | 374355 | CCDC172 | coiled-coil domain containi... | XM_017016206.1 | 100% | 100% | |
| 3 | human | 374355 | CCDC172 | coiled-coil domain containi... | XM_006717820.4 | 95.3% | 95.3% | 163_164ins36 |
| 4 | human | 374355 | CCDC172 | coiled-coil domain containi... | XM_011539771.2 | 84.3% | 84.4% | 654_654delGins121 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 840
- ORF length:
- 774
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CTTGGAGTCC CTGTTTCAGC ACATCATCTT CACCGAGCAT CAGGCGGAGG 121 AGAGTCGCCG TTTGATGCGA GAAGTAAGGT CGGAAATAAC CAGATGTCGT GAAAAAATTA 181 AGAAAGCAAC GGAGGAGCTG AATGAAGAGA AAATCAAGCT GGAATCTAAG GTTCAACAGT 241 TTTTTGAAAA ATCCTTCTTC TTACAGCTTT TGAAAGCTCA TGAAAATGCT TTAGAAAAAC 301 AGTACAGTGA AATTACAAAC CATAGGAATA TGCTTCTTCA AACCTTTGAG GCTATAAAGA 361 AACAAATGAT AGAGGAGGAA GACAAATTTA TTAAGGAAAT TACAGACTTT AATAATGATT 421 ATGAAATAAC AAAGAAAAGA GAGCTTTTGA TGAAAGAAAA TGTCAAGATT GAAATATCTG 481 ACTTAGAAAA CCAAGCAAAC ATGTTGAAAA GTGAAATGAA GTCAATGGAA CATGATAGTA 541 GCCAGTTAAA TGAACTTCAA AAACAAAAGA GTGAATTGAT ACAAGAATTA TTTACTCTCC 601 AAAGAAAACT TAAAGTTTTT GAAGATGAAG AGAATGAATC CATTTGTACT ACCAAATATC 661 TAGAGGCAGA AAAAATAAAA ATCAGTGAAA AGCCTCAAAA TGATACAGAA TGCTTAAGAC 721 TTAAAAAAGA ATTAGAACTT TATAAGGAAG ATGACATGGA AAGTGTTTAT GAAGCTCTCC 781 AAACAGAAAT AGAATTTTTG GAGTTGACAT TGGCACAGAA AGATCTTCAG GAAAGCAAAT 841 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 901 acgaac