Construct: ORF ccsbBroadEn_05564

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008189.1_s300c1, BRDN0000391227
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NPSR1 (387129)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 387129 NPSR1 neuropeptide S receptor 1 NM_207173.2 100% 100%
2 human 387129 NPSR1 neuropeptide S receptor 1 NM_001300933.2 97% 97% 276_277ins33
3 human 387129 NPSR1 neuropeptide S receptor 1 NM_207172.2 92.8% 91.5% (many diffs)
4 human 387129 NPSR1 neuropeptide S receptor 1 NM_001300935.1 91.4% 87.5% (many diffs)
5 human 387129 NPSR1 neuropeptide S receptor 1 NM_001300934.1 75.7% 74% (many diffs)
6 mouse 319239 Npsr1 neuropeptide S receptor 1 NM_175678.3 82.1% 81.6% (many diffs)
7 mouse 319239 Npsr1 neuropeptide S receptor 1 XM_017313417.1 82.1% 81.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1200
ORF length:
1131
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCAGCCAAC TTCACAGAGG GCAGCTTCGA TTCCAGTGGG ACCGGGCAGA
121CGCTGGATTC TTCCCCAGTG GCTTGCACTG AAACAGTGAC TTTTACTGAA GTGGTGGAAG
181GAAAGGAATG GGGTTCCTTC TACTACTCCT TTAAGACTGA GCAATTGATA ACTCTGTGGG
241TCCTCTTTGT TTTTACCATT GTTGGAAACT CCGTTGTGCT TTTTTCCACA TGGAGGAGAA
301AGAAGAAGTC AAGAATGACC TTCTTTGTGA CTCAGCTGGC CATCACAGAT TCTTTCACAG
361GACTGGTCAA CATCTTGACA GATATTAATT GGCGATTCAC TGGAGACTTC ACGGCACCTG
421ACCTGGTTTG CCGAGTGGTC CGCTATTTGC AGGTTGTGCT GCTCTACGCC TCTACCTACG
481TCCTGGTGTC CCTCAGCATA GACAGATACC ATGCCATCGT CTACCCCATG AAGTTCCTTC
541AAGGAGAAAA GCAAGCCAGG GTCCTCATTG TGATCGCCTG GAGCCTGTCT TTTCTGTTCT
601CCATTCCCAC CCTGATCATA TTTGGGAAGA GGACACTGTC CAACGGTGAA GTGCAGTGCT
661GGGCCCTGTG GCCTGACGAC TCCTACTGGA CCCCATACAT GACCATCGTG GCCTTCCTGG
721TGTACTTCAT CCCTCTGACA ATCATCAGCA TCATGTATGG CATTGTGATC CGAACTATTT
781GGATTAAAAG CAAAACCTAC GAAACAGTGA TTTCCAACTG CTCAGATGGG AAACTGTGCA
841GCAGCTATAA CCGAGGACTC ATCTCAAAGG CAAAAATCAA GGCTATCAAG TATAGCATCA
901TCATCATTCT TGCCTTCATC TGCTGTTGGA GTCCATACTT CCTGTTTGAC ATTTTGGACA
961ATTTCAACCT CCTTCCAGAC ACCCAGGAGC GTTTCTATGC CTCTGTGATC ATTCAGAACC
1021TGCCAGCATT GAATAGTGCC ATCAACCCCC TCATCTACTG TGTCTTCAGC AGCTCCATCT
1081CTTTCCCCTG CAGGGTCATC CGTCTCCGTC AGCTCCAGGA GGCTGCGCTA ATGCTCTGCC
1141CTCAACGAGA GAACTGGAAG GGTACTTGGC CAGGTGTACC TTCCTGGGCT CTTCCAAGGT
1201TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1261acgaac

Download FASTA (ORF) (Full)

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