Construct: ORF ccsbBroadEn_05602
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016309.1_s300c1, BRDN0000456986
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BNIP5 (389384)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 389384 | BNIP5 | BCL2 interacting protein 5 | NM_001010903.5 | 100% | 100% | |
| 2 | human | 389384 | BNIP5 | BCL2 interacting protein 5 | XM_011514596.2 | 100% | 100% | |
| 3 | human | 389384 | BNIP5 | BCL2 interacting protein 5 | XM_011514597.2 | 99.8% | 99.8% | 1168_1169insAAG |
| 4 | human | 389384 | BNIP5 | BCL2 interacting protein 5 | XM_011514598.2 | 61.9% | 61.9% | 0_1ins744 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2025
- ORF length:
- 1956
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGAATCCA AGGTGCCCAA GGAGGCCCCT GGCGGAGAAG AAAGCCAGGT 121 CTCTGGACAG GCCGCAGGCC CCCGGGAAAG GCTCGGAGTC GTGGGACTGC CATTGGCTCT 181 CCCTGCCCAC TGCCCCCTCC AGGAAGGCGC TTCACTGGAC GACCAGTGAT TGGGCCAGAC 241 ATTCAGACAG CCCAGCTCCA TCTGCAGAGG CTCACTGCAC CACCGCTGCA GCCCCCACTC 301 CCGAGGAGAC CGGAGATTTT CTCCCCAGCG AGCAGAGGCC TTCGCAAGAC ACCAAGAAGG 361 GGTGGCTGAA GACCATGCTG AACTTCTTCG TGAGGACGGG CCCTGAGGAG CCCAGAGAAA 421 AGGCCAGCAG GAGGCCAAGG GGGAAGGAGG GTATCTCCCA GCATCCGGAG CCCCTGGAAG 481 CAGCAGGGGA GCCAGCCCTC AGGAAGAAAG CCCACCACGA CAAGAAGCCC AGCCGCAAGA 541 AGCAAGGTCA CAAGAAACAC GCGGCCGAGG TGACTAAGGC AGCTCAAGAC CAGGAGGCCA 601 GAGGCCGAGA GGAAGGGTTG TCCAAGGCAG CTGCTGCCTT GCGCTCCGGG GAGGCTGACC 661 TGGGCCCAGC TCGCAGGGGT GGGGAAGATT CTGATCACCA GTCCTTCCTC ATCAAAGTGG 721 ATGGTACTGG AGCTTTGGAT GTTTCTCCCC ATGCCACAGG TCATCAGCAA GAAGAGGAGC 781 TCAAAAAGCC TGACCAGGAT GCTATCATTC AGATGATAGT GGAATTGCTC AAAAGAGTGG 841 GAGACCAGTG GGAAGAAGAG CAATCTCTGG CCTCACAGCT GGGGGTGGCC CTGCCAAACC 901 CAGCACCAGC TGTTAGGAAG AAATCCCAAG AGAAAAAGAC AAGCCTCAAG AGAACCTCAA 961 AGACAAACCC CAAGAAACAC GGCTCCGAGG AGGCCAAGAG GGGGGCTGCA GATGTTTCCA 1021 GTCCAGAGGC CTGGCCACCC AAGAAGTCCA GCTTTCTGCC CCTGTGTGTC AGCGGCCATC 1081 GGCCTTCCAT CTCCAGCAGC TATGGCTTGG AAGAACCTAA AGTCCAGGAG GCCCCATCTA 1141 CAGAGGCTGG GGCTCCAGGT CCCTCCGTGC TTCCCACCCC ATCAGAGAGC CAGGAACCTG 1201 GAGAGGAGCT TCCGCTGGAC AGAGCCTCGG AATACAAAGA ATTCATTCAG AAGATCATTT 1261 CCATGCTCCA AGATGCAGAA GAACAGCAAG GAGAGGAGCA ACCTCAAGTC CAGCAGGAAG 1321 AGGTGGGTGT AGAAAACCCG GCCCCACACT GCAGAAGGAA ATCTCAAGAA AAAAGGTCGA 1381 GCTTCAGGAG AGCGTTTTAC CATAAGAAAC ACACCTCCAA GGAACCCAGA AGAGCGGGGG 1441 CAGCAGGGGC TGCCAGCCCA GAGGCCCGAC GACCCAAGAG GCCCAGCTTT CTGCCCCTGT 1501 GTGTTGGTGG CCATCGGCCC TCCACCTCCA GCAGCCTTGA TCCAGAAGAT CTCGAGTGCC 1561 GGGAGCCCCT GCCCGCAGAA GGGGAGCCAG TTGTGATCTC AGAAGCACCC TCCCAGGCTA 1621 GAGGCCACAC GCCAGAAGGG GCACCTCAGC TGAGTGGAGC ATGTGAATCT AAGGAGATCA 1681 TCATCCAGAA GCTTGTGGCA CTTCTCCAAG AAGTGGATGG CCAACTGGGG CAGCAGATCA 1741 GGCGCCACCC CAGCTTTAAG AGGTTTTTTT ACGAGTTCTC GGACTCCTCC CTCAGCAAGC 1801 TGGTAGCCAC CCTGCGCAGC CAGGTGGCTC ACTCCTCTAA GCTGGACAGG AACCGCGCCA 1861 GGAGACTCTA CCAGTTTGAC GTTAGCTTAG CTAACAAATT TGCTGGCAGC AACAGCCATG 1921 CCATGTGCAT CCTCATGGGC CTAAGAGACC ACTACAATTG CACCCAGTTC CCATACAGGG 1981 AGGACCAGCC GAACATCACA AGTCCTAAGG TTGAAAGTCC AGATTTGCCA ACTTTCTTGT 2041 ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c