Construct: ORF ccsbBroadEn_05707
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017340.1_s300c1, BRDN0000456352
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF704 (619279)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 619279 | ZNF704 | zinc finger protein 704 | NM_001033723.3 | 100% | 100% | |
| 2 | human | 619279 | ZNF704 | zinc finger protein 704 | XM_017013725.1 | 98% | 98% | 1_24del |
| 3 | human | 619279 | ZNF704 | zinc finger protein 704 | NM_001367783.1 | 70.3% | 70.3% | 1_522del |
| 4 | human | 619279 | ZNF704 | zinc finger protein 704 | XR_928797.2 | 9.3% | 1_863del;2100_13275del | |
| 5 | mouse | 170753 | Zfp704 | zinc finger protein 704 | XM_006530055.3 | 84.6% | 89.1% | (many diffs) |
| 6 | mouse | 170753 | Zfp704 | zinc finger protein 704 | NM_133218.2 | 61.3% | 64.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1305
- ORF length:
- 1236
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACCTTCACA TTTCAGTCAG AGGACTTAAA ACGTGACTGT GGTAAAAAAA 121 TGTCTCATCA ACACGTGTTT TCCTTGGCCA TGGAGGAAGA TGTGAAAACA GCAGACACCA 181 AAAAAGCCAG CCGGATCCTT GACCATGAAA AAGAAAACAC TCGCTCCATC TGTCTCCTTG 241 AGCAAAAAAG AAAAGTTGTT TCCTCCAACA TTGATGTTCC TCCAGCAAGG AAATCTTCAG 301 AGGAACTAGA CATGGACAAG GTGACAGCAG CAATGGTACT AACCAGCTTG TCGACTAGCC 361 CTTTGGTTCG AAGTCCTCCC GTGCGGCCGA ACGAGAGCCT CAGCGGATCC TGGAAGGAGG 421 GCGGCTGCGT GCCTTCCAGC ACCAGCAGCA GCGGCTACTG GAGCTGGAGC GCCCCCAGCG 481 ACCAGTCCAA CCCGTCCACG CCGTCGCCGC CGCTCTCGGC TGACAGCTTC AAGCCCTTCC 541 GCAGCCCCGC GCAGCCAGAC GACGGCATCG ACGAGGCGGA GGCCAGCAAC CTGCTCTTCG 601 ACGAGCCCAT TCCCAGGAAA AGAAAGAATT CCATGAAGGT GATGTTCAAA TGCCTCTGGA 661 AAAACTGTGG GAAGGTGCTG AGCACTGCAG CAGGTATCCA GAAACACATC CGAACCATCC 721 ATCTGGGGCG CGTTGGAGAC TCTGACTACA GTGATGGAGA AGAGGACTTT TACTACACTG 781 AGATCAAGCT CAACACAGAC TCAGTGGCAG ACGGGCTGAG CAGCCTGGCC CCGGTCTCAC 841 CTTCCCAGTC CCTGGCTTCA CCTCCTACTT TCCCCATCCC AGATTCAAGC CGAACAGAAA 901 CTCCTTGTGC CAAAACGGAG ACTAAGTTGA TGACGCCGTT GAGCCGCTCA GCTCCCACCA 961 CCCTCTACCT CGTGCACACT GACCATGCTT ACCAGGCCAC ACCCCCTGTG ACCATTCCAG 1021 GATCGGCCAA GTTCACCCCC AATGGCAGCA GCTTCAGCAT TTCCTGGCAA TCTCCTCCGG 1081 TCACTTTCAC AGGCATCCCA GTGTCACCCA CACATCATCC GGTGGGCACA GGAGAGCAGA 1141 GACAGCATGC GCACACGGTC CTGTCCTCCC CACCCAGAGG CACAGTCAGC TTAAGGAAGC 1201 CCAGGGGAGA GGGCAAAAAG TGTCGGAAGG TGTACGGGAT GGAGAACCGA GACATGTGGT 1261 GTACCGCCTG CCGCTGGAAG AAGGCCTGCC AGAGGTTCCT CGACTTGCCA ACTTTCTTGT 1321 ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c