Construct: ORF ccsbBroadEn_05743

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012494.1_s300c1, BRDN0000397718
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TEKT4P2 (100132288)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 100132288 TEKT4P2 tektin 4 pseudogene 2 NR_038328.2 53.5% (many diffs)
2 human 100233156 LOC100233156 tektin 4 pseudogene NR_037871.1 49.4% (many diffs)
3 human 150483 TEKT4 tektin 4 NM_001286559.2 44.2% 37.8% (many diffs)
4 human 727764 MAFIP MAFF interacting protein (p... NR_046440.2 40.8% 1_90del;322C>T;478_946del
5 human 150483 TEKT4 tektin 4 NM_144705.4 25.8% 22.4% (many diffs)
6 human 100132288 TEKT4P2 tektin 4 pseudogene 2 NR_038327.2 23.8% 1_81del;313C>T;469_1617del
7 human 150483 TEKT4 tektin 4 XM_011510670.2 23.7% 20.5% (many diffs)
8 human 100233156 LOC100233156 tektin 4 pseudogene NR_037872.1 23.5% (many diffs)
9 human 105379273 LOC105379273 uncharacterized LOC105379273 XR_002958840.1 20.7% (many diffs)
10 human 727764 MAFIP MAFF interacting protein (p... NR_046441.2 16.4% (many diffs)
11 human 727764 MAFIP MAFF interacting protein (p... NR_046439.2 13.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
453
ORF length:
387
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT TCCAGTGTCC TCTGGGTGTT TCCAAGAGCA ACAAGAAACG AATAAATCTC
121TGCCCCGCAG CGCCTCCACC CCAGAGACCC GGACCAAGTT CACACAGGAC AATCTGTGCC
181ACGCCCAGCG CGAGCGCCTG GACTCGGCCA ACCTGTGGGT GCTGGTGGAC TGCATCCTTC
241GCGACACCTC CGAGGACCTG GGACTCCAGT GTGACGCCGT GAACCTGGCC TTCGGGTGCC
301GCTGTGAGGA ACTGGAGGAC GCGCGGCACA AGCTGCAGCA CCACCTGCAC AAGATGCTGC
361GGGAAATCAC AGATCAGGAA CACAACGTGG TGGCACTGAA GGAGGCCATC AAGGACAAGG
421AGGAACCTCT GCACATAGCC CAGACCCGGC TGTACCCAAC TTTCTTGTAC AAAGTtggca
481ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)