Construct: ORF ccsbBroadEn_05743
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012494.1_s300c1, BRDN0000397718
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TEKT4P2 (100132288)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100132288 | TEKT4P2 | tektin 4 pseudogene 2 | NR_038328.2 | 53.5% | (many diffs) | |
| 2 | human | 100233156 | LOC100233156 | tektin 4 pseudogene | NR_037871.1 | 49.4% | (many diffs) | |
| 3 | human | 150483 | TEKT4 | tektin 4 | NM_001286559.2 | 44.2% | 37.8% | (many diffs) |
| 4 | human | 727764 | MAFIP | MAFF interacting protein (p... | NR_046440.2 | 40.8% | 1_90del;322C>T;478_946del | |
| 5 | human | 150483 | TEKT4 | tektin 4 | NM_144705.4 | 25.8% | 22.4% | (many diffs) |
| 6 | human | 100132288 | TEKT4P2 | tektin 4 pseudogene 2 | NR_038327.2 | 23.8% | 1_81del;313C>T;469_1617del | |
| 7 | human | 150483 | TEKT4 | tektin 4 | XM_011510670.2 | 23.7% | 20.5% | (many diffs) |
| 8 | human | 100233156 | LOC100233156 | tektin 4 pseudogene | NR_037872.1 | 23.5% | (many diffs) | |
| 9 | human | 105379273 | LOC105379273 | uncharacterized LOC105379273 | XR_002958840.1 | 20.7% | (many diffs) | |
| 10 | human | 727764 | MAFIP | MAFF interacting protein (p... | NR_046441.2 | 16.4% | (many diffs) | |
| 11 | human | 727764 | MAFIP | MAFF interacting protein (p... | NR_046439.2 | 13.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 453
- ORF length:
- 387
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT TCCAGTGTCC TCTGGGTGTT TCCAAGAGCA ACAAGAAACG AATAAATCTC 121 TGCCCCGCAG CGCCTCCACC CCAGAGACCC GGACCAAGTT CACACAGGAC AATCTGTGCC 181 ACGCCCAGCG CGAGCGCCTG GACTCGGCCA ACCTGTGGGT GCTGGTGGAC TGCATCCTTC 241 GCGACACCTC CGAGGACCTG GGACTCCAGT GTGACGCCGT GAACCTGGCC TTCGGGTGCC 301 GCTGTGAGGA ACTGGAGGAC GCGCGGCACA AGCTGCAGCA CCACCTGCAC AAGATGCTGC 361 GGGAAATCAC AGATCAGGAA CACAACGTGG TGGCACTGAA GGAGGCCATC AAGGACAAGG 421 AGGAACCTCT GCACATAGCC CAGACCCGGC TGTACCCAAC TTTCTTGTAC AAAGTtggca 481 ttataagaaa gcattgctta tcaatttgtt gcaacgaac