Construct: ORF ccsbBroadEn_05750
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013435.1_s300c1, BRDN0000385733
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NAT2 (10)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10 | NAT2 | N-acetyltransferase 2 | NM_000015.3 | 99.6% | 99.3% | 282C>T;590G>A;803G>A |
| 2 | human | 10 | NAT2 | N-acetyltransferase 2 | XM_017012938.1 | 99.6% | 99.3% | 282C>T;590G>A;803G>A |
| 3 | human | 9 | NAT1 | N-acetyltransferase 1 | NM_000662.8 | 86.5% | 80.6% | (many diffs) |
| 4 | human | 9 | NAT1 | N-acetyltransferase 1 | NM_001160170.4 | 86.5% | 80.6% | (many diffs) |
| 5 | human | 9 | NAT1 | N-acetyltransferase 1 | NM_001160171.4 | 86.5% | 80.6% | (many diffs) |
| 6 | human | 9 | NAT1 | N-acetyltransferase 1 | NM_001160172.4 | 86.5% | 80.6% | (many diffs) |
| 7 | human | 9 | NAT1 | N-acetyltransferase 1 | NM_001160173.3 | 86.5% | 80.6% | (many diffs) |
| 8 | human | 9 | NAT1 | N-acetyltransferase 1 | NM_001160174.2 | 86.5% | 80.6% | (many diffs) |
| 9 | human | 9 | NAT1 | N-acetyltransferase 1 | NM_001160179.3 | 86.5% | 80.6% | (many diffs) |
| 10 | human | 9 | NAT1 | N-acetyltransferase 1 | XM_006716410.3 | 86.5% | 80.6% | (many diffs) |
| 11 | human | 9 | NAT1 | N-acetyltransferase 1 | XM_011544689.2 | 86.5% | 80.6% | (many diffs) |
| 12 | human | 9 | NAT1 | N-acetyltransferase 1 | NM_001160175.4 | 71.4% | 66.4% | (many diffs) |
| 13 | human | 9 | NAT1 | N-acetyltransferase 1 | NM_001160176.4 | 71.4% | 66.4% | (many diffs) |
| 14 | human | 9 | NAT1 | N-acetyltransferase 1 | NM_001291962.2 | 71.4% | 66.4% | (many diffs) |
| 15 | human | 9 | NAT1 | N-acetyltransferase 1 | XM_011544687.1 | 71.4% | 66.4% | (many diffs) |
| 16 | human | 9 | NAT1 | N-acetyltransferase 1 | XM_011544688.1 | 71.4% | 66.4% | (many diffs) |
| 17 | human | 9 | NAT1 | N-acetyltransferase 1 | XM_017013947.1 | 71.4% | 66.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 936
- ORF length:
- 870
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CATTGAAGCA TATTTTGAAA GAATTGGCTA TAAGAACTCT AGGAACAAAT 121 TGGACTTGGA AACATTAACT GACATTCTTG AGCACCAGAT CCGGGCTGTT CCCTTTGAGA 181 ACCTTAACAT GCATTGTGGG CAAGCCATGG AGTTGGGCTT AGAGGCTATT TTTGATCACA 241 TTGTAAGAAG AAACCGGGGT GGGTGGTGTC TCCAGGTCAA TCAACTTCTG TACTGGGCTC 301 TGACCACAAT CGGTTTTCAG ACCACAATGT TAGGAGGGTA TTTTTATATC CCTCCAGTTA 361 ACAAATACAG CACTGGCATG GTTCACCTTC TCCTGCAGGT GACCATTGAC GGCAGGAATT 421 ACATTGTCGA TGCTGGGTCT GGAAGCTCCT CCCAGATGTG GCAGCCTCTA GAATTAATTT 481 CTGGGAAGGA TCAGCCTCAG GTGCCTTGCA TTTTCTGCTT GACAGAAGAG AGAGGAATCT 541 GGTACCTGGA CCAAATCAGG AGAGAGCAGT ATATTACAAA CAAAGAATTT CTTAATTCTC 601 ATCTCCTGCC AAAGAAGAAA CACCAAAAAA TATACTTATT TACGCTTGAA CCTCAAACAA 661 TTGAAGATTT TGAGTCTATG AATACATACC TGCAGACGTC TCCAACATCT TCATTTATAA 721 CCACATCATT TTGTTCCTTG CAGACCCCAG AAGGGGTTTA CTGTTTGGTG GGCTTCATCC 781 TCACCTATAG AAAATTCAAT TATAAAGACA ATACAGATCT GGTCGAGTTT AAAACTCTCA 841 CTGAGGAAGA GGTTGAAGAA GTGCTGAAAA ATATATTTAA GATTTCCTTG GGGAGAAATC 901 TCGTGCCCAA ACCTGGTGAT GGATCCCTTA CTATTTACCC AACTTTCTTG TACAAAGTtg 961 gcattataag aaagcattgc ttatcaattt gttgcaacga ac