Construct: ORF ccsbBroadEn_05889

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007072.1_s300c1, BRDN0000389460
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BGN (633)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 633 BGN biglycan NM_001711.6 99.9% 100% 141G>A
2 human 633 BGN biglycan XM_017029724.2 99.9% 100% 141G>A
3 mouse 12111 Bgn biglycan NM_007542.5 88.4% 95.6% (many diffs)
4 mouse 12111 Bgn biglycan XM_006527758.3 84.9% 91.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1170
ORF length:
1104
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTG GCCCCTGTGG CGCCTCGTGT CTCTGCTGGC CCTGAGCCAG GCCCTGCCCT
121TTGAGCAGAG AGGCTTCTGG GACTTCACCC TGGACGATGG GCCATTCATG ATGAACGATG
181AGGAAGCTTC GGGCGCTGAC ACCTCAGGCG TCCTGGACCC GGACTCTGTC ACACCCACCT
241ACAGCGCCAT GTGTCCTTTC GGCTGCCACT GCCACCTGCG GGTGGTTCAG TGCTCCGACC
301TGGGTCTGAA GTCTGTGCCC AAAGAGATCT CCCCTGACAC CACGCTGCTG GACCTGCAGA
361ACAACGACAT CTCCGAGCTC CGCAAGGATG ACTTCAAGGG TCTCCAGCAC CTCTACGCCC
421TCGTCCTGGT GAACAACAAG ATCTCCAAGA TCCATGAGAA GGCCTTCAGC CCACTGCGGA
481AGCTGCAGAA GCTCTACATC TCCAAGAACC ACCTGGTGGA GATCCCGCCC AACCTACCCA
541GCTCCCTGGT GGAGCTCCGC ATCCACGACA ACCGCATCCG CAAGGTGCCC AAGGGAGTGT
601TCAGCGGGCT CCGGAACATG AACTGCATCG AGATGGGCGG GAACCCACTG GAGAACAGTG
661GCTTTGAACC TGGAGCCTTC GATGGCCTGA AGCTCAACTA CCTGCGCATC TCAGAGGCCA
721AGCTGACTGG CATCCCCAAA GACCTCCCTG AGACCCTGAA TGAACTCCAC CTAGACCACA
781ACAAAATCCA GGCCATCGAA CTGGAGGACC TGCTTCGCTA CTCCAAGCTG TACAGGCTGG
841GCCTAGGCCA CAACCAGATC AGGATGATCG AGAACGGGAG CCTGAGCTTC CTGCCCACCC
901TCCGGGAGCT CCACTTGGAC AACAACAAGT TGGCCAGGGT GCCCTCAGGG CTCCCAGACC
961TCAAGCTCCT CCAGGTGGTC TATCTGCACT CCAACAACAT CACCAAAGTG GGTGTCAACG
1021ACTTCTGTCC CATGGGCTTC GGGGTGAAGC GGGCCTACTA CAACGGCATC AGCCTCTTCA
1081ACAACCCCGT GCCCTACTGG GAGGTGCAGC CGGCCACTTT CCGCTGCGTC ACTGACCGCC
1141TGGCCATCCA GTTTGGCAAC TACAAAAAGT ACCCAACTTT CTTGTACAAA GTtggcatta
1201taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)