Transcript: Human NM_001711.6

Homo sapiens biglycan (BGN), mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
BGN (633)
Length:
2353
CDS:
146..1252

Additional Resources:

NCBI RefSeq record:
NM_001711.6
NBCI Gene record:
BGN (633)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001711.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000157828 CCATCCAGTTTGGCAACTACA pLKO.1 1224 CDS 100% 4.950 6.930 N BGN n/a
2 TRCN0000265852 CCTCGTCCTGGTGAACAACAA pLKO_005 499 CDS 100% 4.950 6.930 N BGN n/a
3 TRCN0000153232 GAACATGAACTGCATCGAGAT pLKO.1 694 CDS 100% 4.050 5.670 N BGN n/a
4 TRCN0000265843 CTGAATGAACTCCACCTAGAC pLKO_005 836 CDS 100% 4.050 3.240 N BGN n/a
5 TRCN0000152593 GAAGCTCTACATCTCCAAGAA pLKO.1 568 CDS 100% 4.950 3.465 N BGN n/a
6 TRCN0000255868 TCGATGGCCTGAAGCTCAACT pLKO_005 759 CDS 100% 4.950 3.465 N BGN n/a
7 TRCN0000255867 TTCGCTACTCCAAGCTGTACA pLKO_005 894 CDS 100% 4.950 3.465 N BGN n/a
8 TRCN0000158008 CCAGATCAGGATGATCGAGAA pLKO.1 934 CDS 100% 4.050 2.835 N BGN n/a
9 TRCN0000153413 GCCATTCATGATGAACGATGA pLKO.1 241 CDS 100% 4.050 2.835 N BGN n/a
10 TRCN0000156631 GCTCTACATCTCCAAGAACCA pLKO.1 571 CDS 100% 2.640 1.848 N BGN n/a
11 TRCN0000157314 CAAGATCCATGAGAAGGCCTT pLKO.1 526 CDS 100% 2.160 1.512 N BGN n/a
12 TRCN0000156245 CCTCCCTTCTGTTCTCTCTTT pLKO.1 1804 3UTR 100% 4.950 2.970 N BGN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001711.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05889 pDONR223 100% 99.9% 100% None 141G>A n/a
2 ccsbBroad304_05889 pLX_304 0% 99.9% 100% V5 141G>A n/a
3 TRCN0000471736 CACGACCTATCCTGCTGATCAAAC pLX_317 38.4% 99.9% 100% V5 141G>A n/a
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