Construct: ORF ccsbBroadEn_05944
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011450.1_s300c1, BRDN0000394206
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KYAT1 (883)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001122672.1 | 99.4% | 99.4% | 1116_1117insTGGCCC |
| 2 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001122671.1 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 3 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352988.1 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 4 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352989.1 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 5 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352990.1 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 6 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352991.1 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 7 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352992.1 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 8 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352993.1 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 9 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_004059.5 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 10 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | XM_011519168.1 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 11 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | XM_011519169.1 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 12 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | XM_011519170.2 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 13 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | XM_017015265.1 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 14 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | XM_017015267.1 | 87.7% | 87.7% | 202_351del;1266_1267insTGGCCC |
| 15 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352999.1 | 87.6% | 74% | (many diffs) |
| 16 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | XM_024447709.1 | 87.6% | 74% | (many diffs) |
| 17 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352997.1 | 81.2% | 81.2% | 1_102del;304_453del;1368_1369insTGGCCC |
| 18 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352998.1 | 81.2% | 81.2% | 1_102del;304_453del;1368_1369insTGGCCC |
| 19 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | XM_011519167.3 | 78.9% | 78.9% | 1_141del;343_492del;1407_1408insTGGCCC |
| 20 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352995.1 | 71.9% | 71.9% | 1_279del;481_630del;1545_1546insTGGCCC |
| 21 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352996.1 | 71.9% | 71.9% | 1_279del;481_630del;1545_1546insTGGCCC |
| 22 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001287390.2 | 71.8% | 71.8% | 1_282del;484_633del;1548_1549insTGGCCC |
| 23 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NM_001352994.1 | 71.8% | 71.8% | 1_282del;484_633del;1548_1549insTGGCCC |
| 24 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | XM_017015262.1 | 71.8% | 71.8% | 1_282del;484_633del;1548_1549insTGGCCC |
| 25 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | XM_017015260.1 | 70% | 70% | 1_321del;523_672del;1587_1588insTGGCCC |
| 26 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NR_109829.2 | 57.2% | (many diffs) | |
| 27 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NR_148225.1 | 44.8% | (many diffs) | |
| 28 | human | 883 | KYAT1 | kynurenine aminotransferase 1 | NR_148224.1 | 42.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1188
- ORF length:
- 1122
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttGCCATGGC CAAACAGCTG CAGGCCCGAA GGCTAGACGG GATCGACTAC AACCCCTGGG 121 TGGAGTTTGT GAAACTGGCC AGTGAGCATG ACGTCGTGAA CTTGGGCCAG GGCTTCCCGG 181 ATTTCCCACC ACCAGACTTT GCCGTGGAAG CCTTTCAGCA CGCTGTCAGT GGAGACTTCA 241 TGCTTAACCA GTACACCAAG ACATTTGTCA TCATCATCGA ACCCTTTTTT GACTGCTACG 301 AGCCCATGAC AATGATGGCA GGGGGTCGTC CTGTGTTTGT GTCCCTGAAG CCGGGTCCCA 361 TCCAGAATGG AGAACTGGGT TCCAGCAGCA ACTGGCAGCT GGACCCCATG GAGCTGGCCG 421 GCAAATTCAC ATCACGCACC AAAGCCCTGG TCCTCAACAC CCCCAACAAC CCCCTGGGCA 481 AGGTGTTCTC CAGGGAAGAG CTGGAGCTGG TGGCCAGCCT TTGCCAGCAG CATGACGTGG 541 TGTGTATCAC TGATGAAGTC TACCAGTGGA TGGTCTACGA CGGGCACCAG CACATCAGCA 601 TTGCCAGCCT CCCTGGCATG TGGGAACGGA CCCTGACCAT CGGCAGCGCC GGCAAGACCT 661 TCAGCGCCAC TGGCTGGAAG GTGGGCTGGG TCCTGGGTCC AGATCACATC ATGAAGCACC 721 TGCGGACCGT GCACCAGAAC TCCGTCTTCC ACTGCCCCAC GCAGAGCCAG GCTGCAGTAG 781 CCGAGAGCTT TGAACGGGAG CAGCTGCTCT TCCGCCAACC CAGCAGCTAC TTTGTGCAGT 841 TCCCGCAGGC CATGCAGCGC TGCCGTGACC ACATGATACG TAGCCTACAG TCAGTGGGCC 901 TGAAGCCCAT CATCCCTCAG GGCAGCTACT TCCTCATCAC AGACATCTCA GACTTCAAGA 961 GGAAGATGCC TGACTTGCCT GGAGCTGTGG ATGAGCCCTA TGACAGACGC TTCGTCAAGT 1021 GGATGATCAA GAACAAGGGC TTGGTGGCCA TCCCTGTCTC CATCTTCTAT AGTGTGCCAC 1081 ATCAGAAGCA CTTTGACCAC TATATCCGCT TCTGTTTTGT GAAGGATGAA GCCACGCTCC 1141 AGGCCATGGA CGAGAAGCTG CGGAAGTGGA AGGTGGAACT CTGGCCCTGc ccaactttct 1201 tgtacaaagt tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac