Construct: ORF ccsbBroadEn_05976

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003004.1_s300c1, BRDN0000393042
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDH13 (1012)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1012 CDH13 cadherin 13 NM_001257.5 99.7% 99.4% (many diffs)
2 human 1012 CDH13 cadherin 13 NM_001220489.2 94.2% 93.9% (many diffs)
3 human 1012 CDH13 cadherin 13 NM_001220488.2 93.5% 91.6% (many diffs)
4 human 1012 CDH13 cadherin 13 XM_011522804.3 84.6% 82.3% (many diffs)
5 human 1012 CDH13 cadherin 13 NM_001220490.2 64.1% 63.9% (many diffs)
6 human 1012 CDH13 cadherin 13 XM_017022848.2 42.4% 40.2% (many diffs)
7 human 1012 CDH13 cadherin 13 NM_001220491.2 25.2% 23.6% (many diffs)
8 human 1012 CDH13 cadherin 13 XM_017022849.2 23.7% 20.6% (many diffs)
9 human 1012 CDH13 cadherin 13 NM_001220492.2 22.9% 22.2% (many diffs)
10 mouse 12554 Cdh13 cadherin 13 NM_019707.5 87% 92.8% (many diffs)
11 mouse 12554 Cdh13 cadherin 13 XM_006530628.3 85.3% 91% (many diffs)
12 mouse 12554 Cdh13 cadherin 13 XM_017312550.1 84.4% 89.7% (many diffs)
13 mouse 12554 Cdh13 cadherin 13 XM_011248295.1 82.9% 88.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2205
ORF length:
2139
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA GCCGAGAACT CCGCTCGTTC TGTGCGTTCT CCTGTCCCAG GTGCTGCTGC
121TAACATCTGC AGAAGATTTG GACTGCACTC CTGGATTTCA GCAGAAAGTG TTCCATATCA
181ATCAGCCAGC TGAATTCATT GAGGACCAGT CAATTCTAAA CTTGACCTTC AGTGACTGTA
241AGGGAAACGA CAAGCTACGC TATGAGGTCT CGAGCCCATA CTTCAAGGTG AACAGCGATG
301GCGGCTTAGT TGCTCTGAGA AACATAACTG CAGTGGGCAA AACTCTGTTC GTCCATGCAC
361GGACCCCCCA TGCGGAAGAT ATGGCAGAAC TCGTGATTGT CGGGGGGAAA GACATCCAGG
421GCTCCTTGCA GGATATATTT AAATTTGCAA GAACTTCTCC TGTCCCAAGA CAAAAGAGGT
481CCATTGTGGT ATCTCCCATT TTAATTCCAG AGAATCAGAG ACAGCCTTTC CCAAGAGATG
541TTGGCAAGGT AGTCGATAGT GACAGGCCAG AAAGGTCCAA GTTCCGGCTC ACTGGAAAGG
601GAGTGGATCA AGAGCCTAAA GGAATTTTCA GAATCAATGA GAACACAGGG AGCGTCTCCA
661TGACACGGAC CTTGGACAGA GAAGTAATCG CTGTTTATCA ACTATTTGTG GAGACCACTG
721ATGTCAATGG CAAAACTCTC GAGGGGCCGG TGCCTCTGGA AGTCATTGTG ATTGATCAGA
781ATGACAACCG ACCGATCTTT CGGGAAGGCC CCTACATCGG CCACGTCATG GAAGGGTCAC
841CCACAGGCAC CACAGTGATG CGGATGACAG CCTTTGATGC AGATGACCCA GCCACCGATA
901ATGCCCTCCT GCGGTATAAT ATCCGTCGGC AGACGCCTGA CAAGCCATCT CCCAACATGT
961TCTACATCGA TCCTGAGAAA GGAGACATTG TCACTGTTGT GTCACCTGCG CTGCTGGACC
1021GAGAGACTCT GGAAAATCCC AAGTATGAAC TGATCATCGA GGCTCAAGAT ATGGCTGGAC
1081TGGATGTTGG ATTAACAGGC ACGGCCACAG CCACGATCAT GATCGATGAC AAAAATGATC
1141ACTCACCAAA ATTCACCAAG AAAGAGTTTC AAGCCACAGT CGAGGAAGGA GCTGTGGGAG
1201TTATTGTCAA TTTGACAGTT GAAGATAAGG ATGACCCCGC CACAGGTGCA TGGAGGGCTG
1261CCTACACCAT CATCAACGGA AACCCCGGGC AGAGCTTTGA AATCCACACC AACCCTCAAA
1321CCAACGAAGG GATGCTTTCT GTTGTCAAAC CATTGGACTA TGAAATTTCT GCCTTCCACA
1381CCCTGCTGAT CAAAGTGGAA AATGAAGACC CACTCGTACC CGACGTCTCC TACGGCCCCA
1441GCTCCACAGC CACCGTCCAC ATCACTGTCC TGGATGTCAA CGAGGGCCCA GTCTTCTACC
1501CAGACCCCAT GATGGTGACC AGGCAGGAGG ACCTCTCTGT GGGCAGCGTG CTGCTGACAG
1561TGAATGCCAC GGACCCCGAC TCCCTGCAGC ATCAAACCAT CAGGTATTCT GTTTACAAGG
1621ACCCAGCAGG TTGGCTGAAT ATTAACCCCA TCAATGGGAC TGTTGACACC ACAGCTGTGC
1681TGGACCGTGA GTCCACATTT GTCGACAACA GCGTGTACAC TGCTCTCTTC CTGGCAATTG
1741ACAGTGGCAA CCCTCCCGCT ACGGGCACTG GGACTTTGCT GATAACCCTG GAGGACGTGA
1801ATGACAATGC CCCGTTCATT TACCCCACAG TAGCTGAAGT CTGTGATGAT GCCAAAAACC
1861TCAGTGTAGT CATTTTGGGA GCATCAGATA AGGATCTTCA CCCGAATACA GATCCTTTCA
1921AATTTGAAAT CCACAAACAA GCTGTTCCTG ATAAAGTCTG GAAGATCTCC AAGATCAACA
1981ATACACACGC CCTGGTAAGC CTTCTTCAAA ATCTGAACAA AGCAAACTAC AACCTGCCCA
2041TCATGGTGAC AGATTCAGGG AAACCACCCA TGACGAATAT CACAGATCTC AGGGTACAAG
2101TGTGCTCCTG CAGGAATTCC AAAGTGGACT GCAACGCGGC GGGGGCCCTG CGCTTCAGCC
2161TGCCCTCAGT CCTGCTCCTC AGCCTCTTCA GCTTAGCTTG TCTGTGCCCA ACTTTCTTGT
2221ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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