Construct: ORF ccsbBroadEn_05981
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006478.1_s300c1, BRDN0000393168
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDO1 (1036)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1036 | CDO1 | cysteine dioxygenase type 1 | NM_001801.3 | 99.8% | 99.5% | 409A>G |
| 2 | human | 1036 | CDO1 | cysteine dioxygenase type 1 | NM_001323566.2 | 99.3% | 99% | 244_245insGCA;406A>G |
| 3 | human | 1036 | CDO1 | cysteine dioxygenase type 1 | NM_001323565.2 | 91.1% | 90.4% | 170_226del;466A>G |
| 4 | human | 1036 | CDO1 | cysteine dioxygenase type 1 | NM_001323567.2 | 63.8% | 63.5% | 0_1ins216;193A>G |
| 5 | human | 1036 | CDO1 | cysteine dioxygenase type 1 | NR_136619.2 | 36.5% | (many diffs) | |
| 6 | human | 1036 | CDO1 | cysteine dioxygenase type 1 | NR_136620.2 | 35.7% | (many diffs) | |
| 7 | human | 1036 | CDO1 | cysteine dioxygenase type 1 | NR_136621.2 | 34.9% | (many diffs) | |
| 8 | human | 1036 | CDO1 | cysteine dioxygenase type 1 | NR_136618.2 | 31.7% | (many diffs) | |
| 9 | mouse | 12583 | Cdo1 | cysteine dioxygenase 1, cyt... | NM_033037.3 | 87.1% | 91.5% | (many diffs) |
| 10 | mouse | 12583 | Cdo1 | cysteine dioxygenase 1, cyt... | XR_385971.2 | 47.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 666
- ORF length:
- 600
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA ACAGACCGAA GTGCTGAAGC CACGGACCCT GGCTGATCTG ATCCGCATCC 121 TGCACCAGCT CTTTGCCGGC GATGAGGTCA ATGTAGAGGA GGTGCAGGCC ATCATGGAAG 181 CCTACGAGAG CGACCCCACC GAGTGGGCAA TGTACGCCAA GTTCGACCAG TACAGGTATA 241 CCCGAAATCT TGTGGATCAA GGAAATGGAA AATTTAATCT GATGATTCTC TGTTGGGGTG 301 AAGGACATGG CAGCAGTATT CATGATCATA CCAACTCCCA CTGCTTTCTG AAGATGCTAC 361 AGGGAAATCT AAAGGAGACA TTATTTGCCT GGCCTGACAA AAAATCCAAT GAGATGGTCA 421 AGAAGTCTGA AAGAGTCTTG AGGGAAAACC AGTGTGCCTA CATCAATGAT TCCGTTGGCT 481 TACATCGAGT AGAGAACATC AGCCATACGG AACCTGCTGT GAGCCTTCAC TTGTACAGTC 541 CACCTTTTGA TACATGCCAT GCCTTTGATC AAAGAACAGG ACATAAAAAC AAAGTCACAA 601 TGACATTCCA TAGTAAATTT GGAATCAGAA CTCCAAATGC AACTTCGGGC TCGCTGGAGA 661 ACAACTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 721 gttgcaacga ac