Construct: ORF ccsbBroadEn_06049

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013939.1_s300c1, BRDN0000393640
DNA Barcode:
None
Epitope Tag:
None
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
CSF1 (1435)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1435 CSF1 colony stimulating factor 1 NM_000757.6 99.8% 99.8% 1095C>A;1466T>C;1653A>G
2 human 1435 CSF1 colony stimulating factor 1 NM_172212.3 99.8% 99.8% 1095C>A;1466T>C;1653A>G
3 human 1435 CSF1 colony stimulating factor 1 XM_017000369.1 92.4% 92.4% (many diffs)
4 human 1435 CSF1 colony stimulating factor 1 NM_172210.3 78.9% 78.8% 1089_1090ins348;1118T>C;1305A>G
5 human 1435 CSF1 colony stimulating factor 1 NM_172211.4 46% 46% 542_543ins894;572T>C;759A>G
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1728
ORF length:
1662
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CGCGCCGGGC GCCGCCGGGC GCTGCCCTCC CACGACATGG CTGGGCTCCC
121TGCTGTTGTT GGTCTGTCTC CTGGCGAGCA GGAGTATCAC CGAGGAGGTG TCGGAGTACT
181GTAGCCACAT GATTGGGAGT GGACACCTGC AGTCTCTGCA GCGGCTGATT GACAGTCAGA
241TGGAGACCTC GTGCCAAATT ACATTTGAGT TTGTAGACCA GGAACAGTTG AAAGATCCAG
301TGTGCTACCT TAAGAAGGCA TTTCTCCTGG TACAAGACAT AATGGAGGAC ACCATGCGCT
361TCAGAGATAA CACCCCCAAT GCCATCGCCA TTGTGCAGCT GCAGGAACTC TCTTTGAGGC
421TGAAGAGCTG CTTCACCAAG GATTATGAAG AGCATGACAA GGCCTGCGTC CGAACTTTCT
481ATGAGACACC TCTCCAGTTG CTGGAGAAGG TCAAGAATGT CTTTAATGAA ACAAAGAATC
541TCCTTGACAA GGACTGGAAT ATTTTCAGCA AGAACTGCAA CAACAGCTTT GCTGAATGCT
601CCAGCCAAGA TGTGGTGACC AAGCCTGATT GCAACTGCCT GTACCCCAAA GCCATCCCTA
661GCAGTGACCC GGCCTCTGTC TCCCCTCATC AGCCCCTCGC CCCCTCCATG GCCCCTGTGG
721CTGGCTTGAC CTGGGAGGAC TCTGAGGGAA CTGAGGGCAG CTCCCTCTTG CCTGGTGAGC
781AGCCCCTGCA CACAGTGGAT CCAGGCAGTG CCAAGCAGCG GCCACCCAGG AGCACCTGCC
841AGAGCTTTGA GCCGCCAGAG ACCCCAGTTG TCAAGGACAG CACCATCGGT GGCTCACCAC
901AGCCTCGCCC CTCTGTCGGG GCCTTCAACC CCGGGATGGA GGATATTCTT GACTCTGCAA
961TGGGCACTAA TTGGGTCCCA GAAGAAGCCT CTGGAGAGGC CAGTGAGATT CCCGTACCCC
1021AAGGGACAGA GCTTTCCCCC TCCAGGCCAG GAGGGGGCAG CATGCAGACA GAGCCCGCCA
1081GACCCAGCAA CTTCCTCTCA GCATCTTCTC CACTCCCTGC ATCAGCAAAG GGCCAACAGC
1141CGGCAGATGT AACTGGTACA GCCTTGCCCA GGGTGGGCCC CGTGAGGCCC ACTGGCCAGG
1201ACTGGAATCA CACCCCCCAG AAGACAGACC ATCCATCTGC CCTGCTCAGA GACCCCCCGG
1261AGCCAGGCTC TCCCAGGATC TCATCACTGC GCCCCCAGGG CCTCAGCAAC CCCTCCACCC
1321TCTCTGCTCA GCCACAGCTT TCCAGAAGCC ACTCCTCGGG CAGCGTGCTG CCCCTTGGGG
1381AGCTGGAGGG CAGGAGGAGC ACCAGGGATC GGAGGAGCCC CGCAGAGCCA GAAGGAGGAC
1441CAGCAAGTGA AGGGGCAGCC AGGCCCCTGC CCCGTTTTAA CTCCGTTCCT TTGACTGACA
1501CAGGCCATGA GAGGCAGTCC GAGGGATCCT CCAGCCCGCA GCTCCAGGAG TCTGTCTTCC
1561ACCTGCTGGT GCCCAGTGTC ATCCTGGTCT TGCTGGCCGT CGGAGGCCTC TTGTTCTACA
1621GGTGGAGGCG GCGGAGCCAT CAAGAGCCTC AGAGAGCGGA TTCTCCCTTG GAGCAACCAG
1681AGGGCAGCCC CCTGACTCAG GATGACAGAC AGGTGGAGCT GCCAGTGTAA CCAACTTTCT
1741TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)