Construct: ORF ccsbBroadEn_06083
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016933.1_s300c1, BRDN0000396045
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DBN1 (1627)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1627 | DBN1 | drebrin 1 | NM_004395.3 | 99.8% | 99.8% | 318G>A;1336A>G |
| 2 | human | 1627 | DBN1 | drebrin 1 | NM_080881.2 | 97% | 94.4% | (many diffs) |
| 3 | human | 1627 | DBN1 | drebrin 1 | XM_017009140.1 | 97% | 94.2% | (many diffs) |
| 4 | human | 1627 | DBN1 | drebrin 1 | NM_001363541.1 | 93.2% | 93.2% | 318G>A;956_1093del;1474A>G |
| 5 | human | 1627 | DBN1 | drebrin 1 | NM_001364151.1 | 93.1% | 93% | (many diffs) |
| 6 | human | 1627 | DBN1 | drebrin 1 | XM_011534446.2 | 90.6% | 88.1% | (many diffs) |
| 7 | human | 1627 | DBN1 | drebrin 1 | XM_017009139.1 | 90.6% | 88.1% | (many diffs) |
| 8 | human | 1627 | DBN1 | drebrin 1 | XM_011534447.2 | 90.4% | 88.8% | (many diffs) |
| 9 | human | 1627 | DBN1 | drebrin 1 | XM_006714826.2 | 84.1% | 84% | (many diffs) |
| 10 | human | 1627 | DBN1 | drebrin 1 | NM_001364152.1 | 58.6% | 58.5% | 0_1ins804;532A>G |
| 11 | mouse | 56320 | Dbn1 | drebrin 1 | NM_019813.4 | 84.9% | 87.5% | (many diffs) |
| 12 | mouse | 56320 | Dbn1 | drebrin 1 | NM_001177372.1 | 84.8% | 87.4% | (many diffs) |
| 13 | mouse | 56320 | Dbn1 | drebrin 1 | NM_001177371.1 | 79.4% | 81.8% | (many diffs) |
| 14 | mouse | 56320 | Dbn1 | drebrin 1 | XM_006517305.4 | 79.3% | 81.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2013
- ORF length:
- 1947
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CGGCGTCAGC TTCAGCGGCC ACCGCCTGGA GCTGCTGGCG GCTTACGAGG 121 AGGTGATCCG AGAGGAGAGC GCGGCCGACT GGGCTCTGTA CACATATGAA GATGGCTCCG 181 ATGACCTCAA GCTTGCAGCA TCAGGAGAAG GGGGCTTGCA GGAGCTTTCG GGACACTTTG 241 AGAACCAGAA GGTGATGTAC GGCTTCTGCA GTGTCAAGGA CTCCCAAGCT GCTCTGCCAA 301 AATACGTGCT CATCAACTGG GTGGGCGAAG ATGTGCCTGA TGCCCGCAAG TGCGCTTGTG 361 CCAGCCACGT GGCTAAGGTG GCAGAGTTCT TCCAGGGTGT CGACGTGATC GTGAACGCCA 421 GCAGCGTGGA AGACATAGAC GCGGGTGCCA TCGGGCAGCG GCTCTCTAAC GGGCTGGCGC 481 GACTCTCCAG CCCTGTGCTG CACCGACTGC GGCTGCGAGA GGATGAGAAC GCAGAGCCCG 541 TGGGCACCAC CTACCAGAAG ACGGATGCAG CTGTGGAAAT GAAGCGGATT AACCGAGAGC 601 AGTTCTGGGA GCAGGCCAAG AAGGAAGAAG AGCTGCGGAA GGAGGAGGAG CGGAAGAAGG 661 CCCTGGATGA GAGGCTCAGG TTCGAGCAGG AGCGGATGGA GCAGGAGCGG CAGGAGCAAG 721 AGGAGCGCGA GCGGCGCTAC CGGGAGCGGG AGCAGCAGAT CGAGGAGCAC AGGAGGAAAC 781 AGCAGACTTT AGAAGCGGAA GAGGCCAAGA GGCGGTTGAA GGAGCAGTCT ATCTTTGGTG 841 ACCATCGGGA TGAGGAGGAA GAGACCCACA TGAAGAAGTC AGAGTCGGAG GTGGAGGAGG 901 CAGCAGCTAT TATTGCCCAG CGGCCTGACA ACCCAAGGGA GTTCTTCAAG CAGCAGGAAA 961 GAGTCGCATC GGCCTCTGCG GGCAGCTGTG ATGTACCCTC GCCCTTCAAC CATCGACCAG 1021 GCAGCCACCT GGACAGCCAC CGGAGGATGG CGCCCACTCC CATCCCCACG CGGAGCCCGT 1081 CTGACTCCAG CACCGCCTCC ACCCCTGTCG CTGAGCAGAT AGAGCGGGCC CTGGATGAGG 1141 TCACCTCCTC GCAGCCTCCA CCACTGCCAC CGCCACCCCC ACCAGCCCAA GAGACCCAGG 1201 AGCCCAGCCC CATCCTAGAC AGTGAGGAGA CCAGAGCAGC AGCCCCTCAG GCCTGGGCCG 1261 GCCCCATGGA GGAGCCCCCT CAGGCACAGG CGCCTCCCCG GGGGCCAGGC AGCCCTGCAG 1321 AGGACTTGAT GTTCATGGAG TCTGCAGAGC AGGCTGTCCT GGCTGCTCCC GTGGAGCCTG 1381 CCACAGCTGA CGCCACGGAG GTCCACGATG CAGCTGACAC CATTGAAACT GACACTGCCA 1441 CTGCTGACAC CACTGTTGCC AACAACGTAC CCCCCGCCGC CACCAGCCTC ATTGACCTAT 1501 GGCCTGGCAA CGGGGAAGGG GCCTCCACAC TCCAGGGTGA GCCCAGGGCC CCCACGCCAC 1561 CCTCGGGTAC TGAGGTCACC CTGGCAGAGG TGCCCCTGCT GGATGAGGTG GCTCCGGAGC 1621 CACTGCTGCC AGCAGGCGAA GGCTGTGCCA CCCTTCTCAA CTTTGATGAG CTGCCTGAGC 1681 CGCCAGCCAC CTTCTGTGAC CCAGAGGAAG TGGAAGGGGA GCCCCTGGCT GCCCCCCAGA 1741 CCCCAACTCT GCCCTCAGCC CTTGAGGAGC TGGAGCAAGA GCAGGAGCCG GAGCCCCACC 1801 TGCTAACCAA TGGCGAGACC ACCCAGAAGG AGGGGACCCA GGCCAGTGAG GGGTACTTCA 1861 GTCAATCACA GGAGGAGGAG TTTGCCCAAT CGGAAGAGCT CTGTGCCAAG GCTCCGCCTC 1921 CTGTGTTCTA CAACAAGCCT CCAGAGATCG ACATCACATG CTGGGATGCA GACCCAGTTC 1981 CAGAAGAGGA GGAGGGCTTC GAGGGTGGTG ATTACCCAAC TTTCTTGTAC AAAGTtggca 2041 ttataagaaa gcattgctta tcaatttgtt gcaacgaac