Construct: ORF ccsbBroadEn_06084
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016407.1_s300c1, BRDN0000455981
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DBP (1628)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1628 | DBP | D-box binding PAR bZIP tran... | NM_001352.5 | 100% | 100% | |
| 2 | human | 1628 | DBP | D-box binding PAR bZIP tran... | XM_017026388.2 | 56% | 46.2% | 0_1ins223;121_122ins206 |
| 3 | human | 1628 | DBP | D-box binding PAR bZIP tran... | XR_243907.4 | 42% | 1_24del;575_1455del;1696_1697ins184 | |
| 4 | mouse | 13170 | Dbp | D site albumin promoter bin... | NM_016974.3 | 85.6% | 92.6% | (many diffs) |
| 5 | mouse | 13170 | Dbp | D site albumin promoter bin... | XM_006540596.2 | 51% | 56% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1041
- ORF length:
- 975
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GCGGCCTGTG AGCGACAGGA CCCCGGCCCC TCTGCTGCTG GGCGGCCCGG 121 CCGGGACACC CCCTGGCGGG GGAGCGCTGC TTGGGTTGCG GAGCCTTCTG CAGGGGACCA 181 GCAAGCCCAA AGAGCCGGCC AGCTGTCTCC TGAAGGAAAA GGAGCGCAAG GCGGCCCTGC 241 CTGCAGCCAC AACCCCTGGG CCAGGCCTGG AGACTGCGGG CCCGGCGGAT GCCCCGGCTG 301 GGGCAGTGGT GGGCGGAGGG TCCCCGCGGG GGCGCCCGGG GCCGGTGCCC GCCCCGGGTC 361 TGTTGGCGCC ACTGCTGTGG GAGCGCACGC TGCCGTTCGG CGATGTGGAG TACGTAGACC 421 TGGACGCCTT CCTGCTGGAG CACGGGCTCC CGCCCAGCCC GCCGCCCCCC GGTGGCCCGT 481 CGCCGGAGCC GTCGCCCGCG CGGACGCCCG CACCCTCCCC AGGGCCGGGT TCGTGCGGCT 541 CGGCTTCCCC CCGCTCCTCT CCTGGGCACG CCCCCGCCCG GGCTGCCCTC GGGACCGCCA 601 GCGGCCACCG CGCAGGCCTG ACCTCTCGGG ACACACCCAG CCCTGTGGAC CCAGACACcg 661 tggaGGTGTT GATGACCTTT GAACCCGACC CAGCTGATCT TGCCCTATCA AGCATTCCTG 721 GCCACGAGAC CTTTGACCCT CGAAGACATC GCTTCTCAGA AGAGGAACTT AAGCCCCAGC 781 CAATCATGAA GAAGGCAAGA AAAATCCAGG TGCCGGAGGA GCAGAAGGAT GAGAAATACT 841 GGAGCCGGCG GTACAAGAAC AACGAGGCAG CCAAGCGGTC CCGTGACGCC CGGCGGCTCA 901 AGGAGAACCA GATATCGGTG CGGGCGGCCT TCCTGGAGAA GGAGAACGCC CTGCTGCGGC 961 AGGAAGTTGT GGCCGTGCGC CAGGAGCTGT CCCACTACCG CGCCGTGCTG TCCCGATACC 1021 AGGCCCAGCA CGGGGCCCTG TGCCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc 1081 attgcttatc aatttgttgc aacgaac