Transcript: Human NM_001352.5

Homo sapiens D-box binding PAR bZIP transcription factor (DBP), mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Homo sapiens (human)
Gene:
DBP (1628)
Length:
2170
CDS:
386..1363

Additional Resources:

NCBI RefSeq record:
NM_001352.5
NBCI Gene record:
DBP (1628)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001352.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000013755 CGAAGACATCGCTTCTCAGAA pLKO.1 1061 CDS 100% 4.950 6.930 N DBP n/a
2 TRCN0000013756 CGGTACAAGAACAACGAGGCA pLKO.1 1169 CDS 100% 0.660 0.924 N DBP n/a
3 TRCN0000235685 GACGTGATAATGCAGATAAAT pLKO_005 1473 3UTR 100% 15.000 10.500 N DBP n/a
4 TRCN0000235682 ATCTTGCCCTATCAAGCATTC pLKO_005 1017 CDS 100% 6.000 4.200 N DBP n/a
5 TRCN0000013757 CAGCTGATCTTGCCCTATCAA pLKO.1 1011 CDS 100% 5.625 3.938 N DBP n/a
6 TRCN0000235684 ACCTTTGACCCTCGAAGACAT pLKO_005 1049 CDS 100% 4.950 3.465 N DBP n/a
7 TRCN0000244302 CAATCATGAAGAAGGCAAGAA pLKO_005 1101 CDS 100% 4.950 3.465 N DBP n/a
8 TRCN0000013754 GTGGAGGTGTTGATGACCTTT pLKO.1 980 CDS 100% 4.950 3.465 N DBP n/a
9 TRCN0000013753 ACATCCCCACCTGGCGGAGCT pLKO.1 1373 3UTR 100% 0.000 0.000 N DBP n/a
10 TRCN0000235683 GCTCAAGGAGAACCAGATATC pLKO_005 1216 CDS 100% 10.800 6.480 N DBP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001352.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06084 pDONR223 99.3% 100% 100% None n/a
2 ccsbBroad304_06084 pLX_304 0% 100% 100% V5 n/a
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