Construct: ORF ccsbBroadEn_06126
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004461.1_s300c1, BRDN0000384934
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TSC22D3 (1831)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1831 | TSC22D3 | TSC22 domain family member 3 | NM_001015881.2 | 99.5% | 100% | 231G>C |
| 2 | human | 1831 | TSC22D3 | TSC22 domain family member 3 | NM_004089.4 | 57.2% | 57.4% | 1_171del;402G>C |
| 3 | human | 1831 | TSC22D3 | TSC22 domain family member 3 | NM_001318468.1 | 38.3% | 38.5% | 1_369del;600G>C |
| 4 | human | 1831 | TSC22D3 | TSC22 domain family member 3 | NM_001318470.1 | 38.3% | 38.5% | 1_369del;600G>C |
| 5 | human | 1831 | TSC22D3 | TSC22 domain family member 3 | NM_198057.3 | 38.3% | 38.5% | 1_369del;600G>C |
| 6 | human | 1831 | TSC22D3 | TSC22 domain family member 3 | XM_005262099.1 | 38.3% | 38.5% | 1_369del;600G>C |
| 7 | human | 1831 | TSC22D3 | TSC22 domain family member 3 | XM_005262100.1 | 38.3% | 38.5% | 1_369del;600G>C |
| 8 | human | 1831 | TSC22D3 | TSC22 domain family member 3 | XM_005262102.1 | 38.3% | 38.5% | 1_369del;600G>C |
| 9 | human | 1831 | TSC22D3 | TSC22 domain family member 3 | XM_005262103.4 | 38.3% | 38.5% | 1_369del;600G>C |
| 10 | human | 1831 | TSC22D3 | TSC22 domain family member 3 | XM_011530884.1 | 38.3% | 38.5% | 1_369del;600G>C |
| 11 | human | 1831 | TSC22D3 | TSC22 domain family member 3 | XM_017029335.1 | 38.3% | 38.5% | 1_369del;600G>C |
| 12 | mouse | 14605 | Tsc22d3 | TSC22 domain family, member 3 | XM_006528503.3 | 83% | 88.7% | (many diffs) |
| 13 | mouse | 14605 | Tsc22d3 | TSC22 domain family, member 3 | NM_010286.4 | 48.6% | 51.8% | (many diffs) |
| 14 | mouse | 14605 | Tsc22d3 | TSC22 domain family, member 3 | XM_006528501.3 | 48.6% | 51.8% | (many diffs) |
| 15 | mouse | 14605 | Tsc22d3 | TSC22 domain family, member 3 | NM_001077364.1 | 33.2% | 35.3% | (many diffs) |
| 16 | mouse | 14605 | Tsc22d3 | TSC22 domain family, member 3 | XM_006528499.3 | 33.2% | 35.3% | (many diffs) |
| 17 | mouse | 14605 | Tsc22d3 | TSC22 domain family, member 3 | XM_006528500.3 | 33.2% | 35.3% | (many diffs) |
| 18 | mouse | 14605 | Tsc22d3 | TSC22 domain family, member 3 | XM_006528504.3 | 33.2% | 35.3% | (many diffs) |
| 19 | mouse | 14605 | Tsc22d3 | TSC22 domain family, member 3 | XM_006528505.3 | 33.2% | 35.3% | (many diffs) |
| 20 | mouse | 14605 | Tsc22d3 | TSC22 domain family, member 3 | NR_122039.1 | 11.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 297
- ORF length:
- 231
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TGGGCATGGA TCTGGTGAAG AATCATCTGA TGTATGCTGT GAGAGAGGAG GTGGAGATCC 121 TGAAGGAGCA GATCCGAGAG CTGGTGGAGA AGAACTCCCA GCTAGAGCGT GAGAACACCC 181 TGTTGAAGAC CCTGGCAAGC CCAGAGCAGC TGGAGAAGTT CCAGTCCTGT CTGAGCCCTG 241 AAGAGCCAGC TCCCGAATCC CCACAAGTGC CCGAGGCCCC TGGTGGTTCT GCGGTCTACC 301 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 361 aac