Construct: ORF ccsbBroadEn_06260

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013485.1_s300c1, BRDN0000385294
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GATA3 (2625)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2625 GATA3 GATA binding protein 3 NM_001002295.2 99.9% 99.7% 8T>C
2 human 2625 GATA3 GATA binding protein 3 XM_005252442.2 99.9% 99.7% 8T>C
3 human 2625 GATA3 GATA binding protein 3 XM_005252443.5 99.9% 99.7% 8T>C
4 human 2625 GATA3 GATA binding protein 3 NM_002051.3 99.6% 99.5% 8T>C;776_777insAGA
5 mouse 14462 Gata3 GATA binding protein 3 NM_008091.3 89.6% 96.1% (many diffs)
6 mouse 14462 Gata3 GATA binding protein 3 XM_006497354.1 89.6% 96.1% (many diffs)
7 mouse 14462 Gata3 GATA binding protein 3 XM_006497355.3 89.4% 95.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1398
ORF length:
1332
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGAATGGA GGCGACGGCG GACCAGCCGC GCTGGGTGAG CCACCACCAC CCCGCCGTGC
121TCAACGGGCA GCACCCGGAC ACGCACCACC CGGGCCTCAG CCACTCCTAC ATGGACGCGG
181CGCAGTACCC GCTGCCGGAG GAGGTGGATG TGCTTTTTAA CATCGACGGT CAAGGCAACC
241ACGTCCCGCC CTACTACGGA AACTCGGTCA GGGCCACGGT GCAGAGGTAC CCTCCGACCC
301ACCACGGGAG CCAGGTGTGC CGCCCGCCTC TGCTTCATGG ATCCCTACCC TGGCTGGACG
361GCGGCAAAGC CCTGGGCAGC CACCACACCG CCTCCCCCTG GAATCTCAGC CCCTTCTCCA
421AGACGTCCAT CCACCACGGC TCCCCGGGGC CCCTCTCCGT CTACCCCCCG GCCTCGTCCT
481CCTCCTTGTC GGGGGGCCAC GCCAGCCCGC ACCTCTTCAC CTTCCCGCCC ACCCCGCCGA
541AGGACGTCTC CCCGGACCCA TCGCTGTCCA CCCCAGGCTC GGCCGGCTCG GCCCGGCAGG
601ACGAGAAAGA GTGCCTCAAG TACCAGGTGC CCCTGCCCGA CAGCATGAAG CTGGAGTCGT
661CCCACTCCCG TGGCAGCATG ACCGCCCTGG GTGGAGCCTC CTCGTCGACC CACCACCCCA
721TCACCACCTA CCCGCCCTAC GTGCCCGAGT ACAGCTCCGG ACTCTTCCCC CCCAGCAGCC
781TGCTGGGCGG CTCCCCCACC GGCTTCGGAT GCAAGTCCAG GCCCAAGGCC CGGTCCAGCA
841CAGAAGGCAG GGAGTGTGTG AACTGTGGGG CAACCTCGAC CCCACTGTGG CGGCGAGATG
901GCACGGGACA CTACCTGTGC AACGCCTGCG GGCTCTATCA CAAAATGAAC GGACAGAACC
961GGCCCCTCAT TAAGCCCAAG CGAAGGCTGT CTGCAGCCAG GAGAGCAGGG ACGTCCTGTG
1021CGAACTGTCA GACCACCACA ACCACACTCT GGAGGAGGAA TGCCAATGGG GACCCTGTCT
1081GCAATGCCTG TGGGCTCTAC TACAAGCTTC ACAATATTAA CAGACCCCTG ACTATGAAGA
1141AGGAAGGCAT CCAGACCAGA AACCGAAAAA TGTCTAGCAA ATCCAAAAAG TGCAAAAAAG
1201TGCATGACTC ACTGGAGGAC TTCCCCAAGA ACAGCTCGTT TAACCCGGCC GCCCTCTCCA
1261GACACATGTC CTCCCTGAGC CACATCTCGC CCTTCAGCCA CTCCAGCCAC ATGCTGACCA
1321CGCCCACGCC GATGCACCCG CCATCCAGCC TGTCCTTTGG ACCACACCAC CCCTCCAGCA
1381TGGTCACCGC CATGGGTTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1441gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)