Construct: ORF ccsbBroadEn_06264
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004141.1_s300c1, BRDN0000394168
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GBP2 (2634)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2634 | GBP2 | guanylate binding protein 2 | NM_004120.5 | 99.9% | 99.8% | 929T>G |
| 2 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_011541234.2 | 71.6% | 65.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1839
- ORF length:
- 1773
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCCAGAGATC AACTTGCCGG GCCCAATGAG CCTCATTGAT AACACTAAAG 121 GGCAGCTGGT GGTGAATCCA GAAGCTCTGA AGATCCTATC TGCAATTACG CAGCCTGTGG 181 TGGTGGTGGC GATTGTGGGC CTCTATCGCA CAGGCAAATC CTACCTGATG AACAAGCTGG 241 CTGGGAAGAA AAACGGCTTC TCTCTAGGCT CCACAGTGAA GTCTCACACC AAGGGAATCT 301 GGATGTGGTG TGTGCCTCAT CCCAAGAAGC CAGAACACAC CCTAGTTCTG CTCGACACTG 361 AGGGCCTGGG AGATATAGAG AAGGGTGACA ATGAGAATGA CTCCTGGATC TTTGCCTTGG 421 CCATCCTCCT GAGCAGCACC TTCGTGTACA ATAGCATGGG AACCATCAAC CAGCAGGCCA 481 TGGACCAACT TCACTATGTG ACAGAGCTGA CAGATCGAAT CAAGGCAAAC TCCTCACCTG 541 GTAACAATTC TGTAGACGAC TCAGCTGACT TTGTGAGCTT TTTTCCAGCA TTTGTGTGGA 601 CTCTCAGAGA TTTCACCCTG GAACTGGAAG TAGATGGAGA ACCCATCACT GCTGATGACT 661 ACTTGGAGCT TTCGCTAAAG CTAAGAAAAG GTACTGATAA GAAAAGTAAA AGCTTTAATG 721 ATCCTCGGTT GTGCATCCGA AAGTTCTTCC CCAAGAGGAA GTGCTTCGTC TTCGATTGGC 781 CCGCTCCTAA GAAGTACCTT GCTCACCTAG AGCAGCTAAA GGAGGAAGAG CTGAACCCTG 841 ATTTCATAGA ACAAGTTGCA GAATTTTGTT CCTACATCCT CAGCCATTCC AATGTCAAGA 901 CTCTTTCAGG TGGCATTCCA GTCAATGGGC CTCGTCTAGA GAGCCTGGTG CTGACCTACG 961 TCAATGCCAT CAGCAGTGGG GATCTACCCT GCAGGGAGAA CGCAGTCCTG GCCTTGGCCC 1021 AGATAGAGAA CTCAGCCGCA GTGGAAAAGG CTATTGCCCA CTATGAACAG CAGATGGGCC 1081 AGAAGGTGCA GCTGCCCACG GAAACCCTCC AGGAGCTGCT GGACCTGCAC AGGGACAGTG 1141 AGAGAGAGGC CATTGAAGTC TTCATGAAGA ACTCTTTCAA GGATGTGGAC CAAATGTTCC 1201 AGAGGAAATT AGGGGCCCAG TTGGAAGCAA GGCGAGATGA CTTTTGTAAG CAGAATTCCA 1261 AAGCATCATC AGATTGTTGC ATGGCTTTAC TTCAGGATAT ATTTGGCCCT TTAGAAGAAG 1321 ATGTCAAGCA GGGAACATTT TCTAAACCAG GAGGTTACCG TCTCTTTACT CAGAAGCTGC 1381 AGGAGCTGAA GAATAAGTAC TACCAGGTGC CAAGGAAGGG GATACAGGCC AAAGAGGTGC 1441 TGAAAAAATA TTTGGAGTCC AAGGAGGATG TGGCTGATGC ACTTCTACAG ACTGATCAGT 1501 CACTCTCAGA AAAGGAAAAA GCGATTGAAG TGGAACGTAT AAAGGCTGAA TCTGCAGAAG 1561 CTGCAAAGAA AATGTTGGAG GAAATACAAA AGAAGAATGA GGAGATGATG GAACAGAAAG 1621 AGAAGAGTTA TCAGGAACAT GTGAAACAAT TGACTGAGAA GATGGAGAGG GACAGGGCCC 1681 AGTTAATGGC AGAGCAAGAG AAGACCCTCG CTCTTAAACT TCAGGAACAG GAACGCCTTC 1741 TCAAGGAGGG ATTCGAGAAT GAGAGCAAGA GACTTCAAAA AGACATATGG GATATCCAGA 1801 TGAGAAGCAA ATCATTGGAG CCAATATGTA ACATACTCTA CCCAACTTTC TTGTACAAAG 1861 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac