Construct: ORF ccsbBroadEn_06289
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005643.1_s300c1, BRDN0000392680
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GMPR (2766)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2766 | GMPR | guanosine monophosphate red... | NM_006877.4 | 99.9% | 99.7% | 766T>A |
| 2 | human | 2766 | GMPR | guanosine monophosphate red... | XM_011514508.2 | 68.2% | 62.7% | 697_839del;909T>A;948_949ins230 |
| 3 | mouse | 66355 | Gmpr | guanosine monophosphate red... | NM_025508.5 | 87.3% | 95.6% | (many diffs) |
| 4 | mouse | 66355 | Gmpr | guanosine monophosphate red... | XM_017315562.1 | 73.1% | 80.2% | (many diffs) |
| 5 | mouse | 66355 | Gmpr | guanosine monophosphate red... | XM_017315561.1 | 67% | 70.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1101
- ORF length:
- 1035
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CCGCATAGAT GCGGACCTCA AGCTCGACTT CAAGGATGTC CTGCTCCGAC 121 CTAAGCGGAG CAGCCTCAAG AGCCGAGCCG AGGTGGATCT TGAACGCACC TTCACGTTTC 181 GAAATTCAAA GCAGACCTAC TCAGGGATTC CCATCATCGT GGCCAACATG GACACTGTGG 241 GCACGTTTGA GATGGCAGCC GTGATGTCAC AGCACTCCAT GTTTACAGCA ATTCATAAGC 301 ATTACTCCCT GGATGACTGG AAGCTCTTTG CCACAAATCA CCCAGAATGC CTGCAGAATG 361 TAGCCGTGAG TTCAGGCAGT GGGCAGAATG ATCTGGAAAA GATGACCAGC ATCCTGGAAG 421 CTGTGCCACA GGTTAAGTTT ATTTGCCTGG ATGTGGCCAA TGGGTATTCA GAACATTTTG 481 TGGAATTCGT GAAACTTGTC CGTGCCAAAT TTCCTGAACA CACCATTATG GCAGGGAACG 541 TGGTGACAGG AGAAATGGTA GAAGAGCTTA TTCTTTCCGG AGCAGATATC ATCAAAGTGG 601 GAGTTGGACC AGGTTCTGTG TGCACCACCC GCACCAAGAC GGGAGTGGGG TACCCCCAGC 661 TGAGTGCCGT CATTGAGTGT GCCGACTCTG CCCATGGCCT GAAGGGCCAC ATCATCTCTG 721 ATGGAGGCTG TACGTGTCCA GGGGATGTCG CCAAAGCCTT TGGAGCTGGA GCAGATTTTG 781 TCATGCTGGG AGGAATGTTT TCGGGTCATA CGGAGTGTGC TGGAGAAGTG ATTGAGAGGA 841 ACGGACGGAA GCTCAAGCTC TTCTACGGGA TGAGCTCTGA CACCGCCATG AACAAGCACG 901 CAGGAGGAGT TGCTGAGTAC AGAGCCTCTG AGGGTAAGAC TGTGGAAGTT CCTTACAAAG 961 GAGATGTGGA AAACACTATC CTGGATATTC TCGGGGGACT GAGGTCCACG TGCACCTACG 1021 TGGGGGCCGC CAAACTCAAG GAGCTCAGCA GGAGGGCAAC ATTCATCCGG GTGACCCAGC 1081 AGCACAACAC CGTGTTCAGC TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1141 attgcttatc aatttgttgc aacgaac