Construct: ORF ccsbBroadEn_06330
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014330.1_s300c1, BRDN0000396229
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GSTA2 (2939)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2939 | GSTA2 | glutathione S-transferase a... | NM_000846.5 | 99.8% | 99.5% | 335G>C |
| 2 | human | 2939 | GSTA2 | glutathione S-transferase a... | XM_011514532.3 | 99.8% | 99.5% | 335G>C |
| 3 | human | 2938 | GSTA1 | glutathione S-transferase a... | NM_145740.5 | 96.5% | 95% | (many diffs) |
| 4 | human | 221357 | GSTA5 | glutathione S-transferase a... | NM_153699.1 | 92.7% | 88.7% | (many diffs) |
| 5 | human | 2940 | GSTA3 | glutathione S-transferase a... | NM_000847.5 | 91.7% | 88.7% | (many diffs) |
| 6 | human | 2938 | GSTA1 | glutathione S-transferase a... | XM_005249034.4 | 80.3% | 76% | (many diffs) |
| 7 | human | 2940 | GSTA3 | glutathione S-transferase a... | NM_001363542.2 | 71.4% | 69.3% | (many diffs) |
| 8 | human | 2940 | GSTA3 | glutathione S-transferase a... | XM_006715072.4 | 71.4% | 69.3% | (many diffs) |
| 9 | human | 2940 | GSTA3 | glutathione S-transferase a... | XM_024446414.1 | 71.4% | 69.3% | (many diffs) |
| 10 | human | 2938 | GSTA1 | glutathione S-transferase a... | NM_001319059.2 | 55.4% | 54.9% | (many diffs) |
| 11 | human | 2940 | GSTA3 | glutathione S-transferase a... | XM_011514533.2 | 53% | 50.4% | (many diffs) |
| 12 | human | 2940 | GSTA3 | glutathione S-transferase a... | XR_926166.2 | 47.6% | (many diffs) | |
| 13 | human | 2940 | GSTA3 | glutathione S-transferase a... | XR_926167.2 | 47.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 732
- ORF length:
- 666
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AGAGAAGCCC AAGCTCCACT ACTCCAATAT ACGGGGCAGA ATGGAGTCCA 121 TCCGGTGGCT CCTGGCTGCA GCTGGAGTAG AGTTTGAAGA GAAATTTATA AAATCTGCAG 181 AAGATTTGGA CAAGTTAAGA AATGATGGAT ATTTGATGTT CCAGCAAGTG CCAATGGTTG 241 AGATTGATGG GATGAAGCTG GTGCAGACCA GAGCCATTCT CAACTACATT GCCAGCAAAT 301 ACAACCTCTA TGGGAAAGAC ATAAAGGAGA AAGCCCTGAT TGATATGTAT ATAGAAGGTA 361 TAGCAGATTT GGGTGAAATG ATCCTTCTTC TGCCCTTTAC TCAACCTGAG GAACAAGATG 421 CCAAGCTTGC CTTGATCCAA GAGAAAACAA AAAATCGCTA CTTCCCTGCC TTTGAAAAAG 481 TCTTAAAGAG CCACGGACAA GACTACCTTG TTGGCAACAA GCTGAGCCGG GCTGACATTC 541 ACCTGGTGGA ACTTCTCTAC TACGTGGAAG AGCTTGACTC TAGCCTTATT TCCAGCTTCC 601 CTCTGCTGAA GGCCCTGAAA ACCAGAATCA GTAACCTGCC CACAGTGAAG AAGTTTCTAC 661 AGCCTGGCAG CCCAAGGAAG CCTCCCATGG ATGAGAAATC TTTAGAAGAA TCAAGGAAGA 721 TTTTCAGGTT TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 781 caatttgttg caacgaac