Construct: ORF ccsbBroadEn_06455

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010072.1_s300c1, BRDN0000385487
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
INPP4A (3631)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3631 INPP4A inositol polyphosphate-4-ph... NM_001134225.2 99.9% 99.8% 2285G>A
2 human 3631 INPP4A inositol polyphosphate-4-ph... NM_001134224.1 99.4% 99.3% 1164_1178del;2300G>A
3 human 3631 INPP4A inositol polyphosphate-4-ph... XM_006712503.3 99.3% 99.2% 1164_1181del;2303G>A
4 human 3631 INPP4A inositol polyphosphate-4-ph... XM_011511123.2 96% 95.1% (many diffs)
5 human 3631 INPP4A inositol polyphosphate-4-ph... NM_001351428.1 95.9% 95.7% 1705_1706ins117;2168G>A
6 human 3631 INPP4A inositol polyphosphate-4-ph... XM_011511124.2 95.9% 95.7% 1705_1706ins117;2168G>A
7 human 3631 INPP4A inositol polyphosphate-4-ph... XM_006712501.3 95.5% 93.1% (many diffs)
8 human 3631 INPP4A inositol polyphosphate-4-ph... NM_001351427.1 95.4% 95.2% 1164_1178del;1720_1721ins117;2183G>A
9 human 3631 INPP4A inositol polyphosphate-4-ph... NM_004027.3 95.4% 95.2% 1164_1178del;1720_1721ins117;2183G>A
10 human 3631 INPP4A inositol polyphosphate-4-ph... NM_001351425.2 95.3% 95.1% 1164_1181del;1723_1724ins117;2186G>A
11 human 3631 INPP4A inositol polyphosphate-4-ph... NM_001351426.1 95.3% 95.1% 1164_1181del;1723_1724ins117;2186G>A
12 human 3631 INPP4A inositol polyphosphate-4-ph... XM_006712505.3 95.3% 94.7% (many diffs)
13 human 3631 INPP4A inositol polyphosphate-4-ph... XM_017003996.1 95.1% 95% (many diffs)
14 human 3631 INPP4A inositol polyphosphate-4-ph... XM_006712500.3 95.1% 92.6% (many diffs)
15 human 3631 INPP4A inositol polyphosphate-4-ph... XM_006712499.3 95% 92.5% (many diffs)
16 human 3631 INPP4A inositol polyphosphate-4-ph... XM_024452876.1 95% 92.5% (many diffs)
17 human 3631 INPP4A inositol polyphosphate-4-ph... XM_006712508.3 94.9% 94.8% 1164_1181del;2303G>A;2805_2806ins129
18 human 3631 INPP4A inositol polyphosphate-4-ph... NM_001351429.1 94.8% 94.7% 1703_1704ins150;2135G>A
19 human 3631 INPP4A inositol polyphosphate-4-ph... XM_017004001.1 94.8% 94.7% 1703_1704ins150;2135G>A
20 human 3631 INPP4A inositol polyphosphate-4-ph... XM_017004000.1 94.2% 94.1% 1164_1181del;1721_1722ins150;2153G>A
21 human 3631 INPP4A inositol polyphosphate-4-ph... XM_006712502.3 93.9% 91.4% (many diffs)
22 human 3631 INPP4A inositol polyphosphate-4-ph... XM_011511122.2 93.5% 91.1% (many diffs)
23 human 3631 INPP4A inositol polyphosphate-4-ph... XM_017003994.1 91.6% 89.1% (many diffs)
24 human 3631 INPP4A inositol polyphosphate-4-ph... XM_017004003.1 91.3% 90.7% (many diffs)
25 human 3631 INPP4A inositol polyphosphate-4-ph... NM_001566.2 91.2% 88.7% (many diffs)
26 human 3631 INPP4A inositol polyphosphate-4-ph... NM_001351424.1 91.1% 88.6% (many diffs)
27 human 3631 INPP4A inositol polyphosphate-4-ph... XM_006712504.3 91.1% 88.6% (many diffs)
28 human 3631 INPP4A inositol polyphosphate-4-ph... XM_017003995.1 90.1% 87.7% (many diffs)
29 human 3631 INPP4A inositol polyphosphate-4-ph... XM_006712506.3 90% 87.6% (many diffs)
30 human 3631 INPP4A inositol polyphosphate-4-ph... XM_011511125.2 83.9% 81.6% (many diffs)
31 human 3631 INPP4A inositol polyphosphate-4-ph... XR_001738737.1 59.8% (many diffs)
32 human 3631 INPP4A inositol polyphosphate-4-ph... XM_011511127.2 58.5% 55.2% (many diffs)
33 human 3631 INPP4A inositol polyphosphate-4-ph... XR_922916.2 41.7% (many diffs)
34 human 3631 INPP4A inositol polyphosphate-4-ph... XR_922915.2 24% (many diffs)
35 human 3631 INPP4A inositol polyphosphate-4-ph... XR_001738738.1 22.2% (many diffs)
36 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496013.1 89.7% 95.8% (many diffs)
37 mouse 269180 Inpp4a inositol polyphosphate-4-ph... NM_001290797.1 89.2% 95.3% (many diffs)
38 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496011.1 89.1% 95.2% (many diffs)
39 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496020.1 86.3% 92.7% (many diffs)
40 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496019.1 85.9% 92.3% (many diffs)
41 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496009.1 85.8% 89.2% (many diffs)
42 mouse 269180 Inpp4a inositol polyphosphate-4-ph... NM_030266.4 85.8% 92.2% (many diffs)
43 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496008.1 85.4% 88.8% (many diffs)
44 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496006.1 85.3% 88.7% (many diffs)
45 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_011238525.2 85.3% 88.7% (many diffs)
46 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_017320934.1 85.3% 88.7% (many diffs)
47 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496010.1 84.3% 87.6% (many diffs)
48 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496016.3 82.5% 86.2% (many diffs)
49 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496015.1 82.1% 85.8% (many diffs)
50 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496014.1 82% 85.7% (many diffs)
51 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496018.1 81.1% 84.8% (many diffs)
52 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_006496017.1 81% 84.7% (many diffs)
53 mouse 269180 Inpp4a inositol polyphosphate-4-ph... NM_172971.3 57.9% 59.6% (many diffs)
54 mouse 269180 Inpp4a inositol polyphosphate-4-ph... XM_017320952.1 57.9% 59.6% (many diffs)
55 mouse 269180 Inpp4a inositol polyphosphate-4-ph... NM_001290799.1 56.9% 58.7% (many diffs)
56 mouse 269180 Inpp4a inositol polyphosphate-4-ph... NM_001290798.1 56.9% 58.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2982
ORF length:
2916
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC AGCAAGAGAG CACAGCCCTC GCCATGGTGC CAGGGCCCGT GCAATGCAGC
121GGGCTTCCAC CATCGACGTG GCGGCCGACA TGCTGGGCCT CTCTCTGGCA GGAAATATAC
181AAGACCCAGA TGAGCCCATT TTAGAATTTA GCTTAGCTTG CAGTGAGCTG CATACTCCAT
241CGCTAGATCG AAAGCCAAAT AGTTTTGTTG CGGTGAGTGT CACCACCCCT CCTCAGGCAT
301TCTGGACGAA GCATGCACAG ACGGAGATCA TTGAGGGAAC CAACAATCCT ATATTTCTAA
361GCAGTATTGC CTTCTTTCAA GACTCTCTTA TCAATCAGAT GACACAAGTC AAACTCTCCG
421TGTATGATGT CAAAGATAGA TCTCAGGGAA CAATGTATTT ACTGGGCTCT GGAACGTTCA
481TTGTCAAAGA TCTGCTCCAG GACAGGCATC ATAGGTTGCA TTTAACACTA AGGTCTGCAG
541AGAGTGACCG TGTAGGTAAC ATCACCGTGA TTGGCTGGCA GATGGAGGAG AAGTCAGACC
601AACGGCCCCC TGTGACCCGG TCTGTGGACA CTGTCAATGG GAGGATGGTT CTTCCTGTCG
661ATGAGAGCTT GACGGAGGCG TTAGGAATCC GATCCAAATA CGCTTCATTG CGAAAGGACA
721CTTTGCTGAA ATCGGTGTTC GGTGGTGCCA TCTGCCGCAT GTACCGGTTT CCAACCACTG
781ATGGTAACCA TTTGCGGATC CTGGAGCAGA TGGCAGAGAG CGTGCTCTCC CTGCACGTGC
841CCCGGCAGTT CGTGAAGCTC CTACTAGAGG AAGATGCAGC CAGAGTGTGT GAGCTGGAGG
901AGCTGGGAGA GCTGTCCCCT TGCTGGGAGA GCCTCCGGCG CCAAATTGTC ACCCAGTACC
961AGACCATCAT CCTCACATAC CAGGAGAACC TGACCGACCT CCATCAGTAC AGAGGGCCCT
1021CGTTTAAAGC AAGCAGTTTG AAAGCAGATA AAAAGTTAGA ATTTGTTCCC ACAAACTTGC
1081ACATACAAAG GATGAGAGTT CAAGACGATG GAGGATCAGA TCAGAACTAC GACATCGTCA
1141CCATTGGGGC GCCAGCAGCA CACTGCCAAG GTTTTAAGTC AGGAGGTCTC CGCAAAAAGC
1201TGCACAAATT TGAAGAGACC AAGAAACATA CATCATCTGG CTGCCAGTCC ATAATCTACA
1261TACCCCAGGA TGTTGTCAGA GCCAAGGAGA TCATCGCCCA GATCAACACC CTGAAAACCC
1321AAGTGAGTTA CTACGCAGAG CGGCTGTCAA GGGCAGCCAA GGACAGGTCT GCCACTGGCC
1381TTGAGAGGAC ACTCGCCATC TTGGCAGACA AGACACGGCA GCTGGTCACG GTCTGCGACT
1441GCAAGCTCCT GGCCAACTCC ATCCATGGGC TGAACGCTGC ACGGCCTGAC TACATTGCCT
1501CCAAGGCCTC TCCCACTTCG ACTGAGGAGG AGCAGGTGAT GCTTAGAAAT GACCAGGACA
1561CCCTCATGGC CCGGTGGACA GGGAGAAACA GCCGATCTTC CCTGCAGGTG GACTGGCACG
1621AGGAGGAGTG GGAGAAAGTG TGGCTGAACG TGGACAAGAG CCTAGAGTGC ATCATTCAGC
1681GTGTGGACAA GCTGCTGCAG AAGGAGCGGC TGCATGGCGA GGGCTGTGAG GATGTCTTCC
1741CCTGTGCAGG CAGCTGCACC AGCAAGAAAG GTAACCCGGA CAGCCACGCC TACTGGATCA
1801GACCAGAAGA CCCCTTCTGT GATGTCCCCT CCTCACCATG CCCCTCCACC ATGCCCTCCA
1861CTGCATGCCA TCCTCATCTG ACCACACATT GCAGTCCCCC TCCTGAAGAG TCCAGCCCAG
1921GTGAATGGAG TGAGGCCCTT TACCCGCTGC TGACCACTCT CACCGACTGC GTGGCCATGA
1981TGAGTGACAA GGCCAAGAAG GCCATGGTAT TCCTGCTCAT GCAGGACAGC GCGCCCACCA
2041TAGCCACCTA CCTGAGCCTG CAGTACCGCC GTGACGTGGT CTTCTGCCAG ACGCTGACCG
2101CCCTCATCTG CGGCTTCATC ATTAAGCTGA GGAACTGCCT GCATGACGAC GGCTTCCTGC
2161GCCAGCTCTA CACCATCGGG CTGCTGGCCC AGTTCGAGAG CCTGCTGAGC ACCTACGGGG
2221AGGAGCTGGC AATGCTGGAG GACATGAGCC TTGGGATCAT GGACTTGAGG AACGTGACCT
2281TCAAAGTCAC TCAGGCCACT TCCAGCGCCT CCGCAGACAT GCTGCCCGTC ATCACAGGAA
2341ATCGCGACGA GTTTAACGTG CGGGTCCCTC TGCCGGGCCC GCTGTTTGAC GCCTTGCCCC
2401GGGAGATCCA GAGTGGCATG CTGCTGCGAG TGCAGCCCGT CCTCTTCAAC GTGGGCATCA
2461ATGAGCAGCA GACACTGGCC GAGAGGTTTG GCGATACGTC TTTACAAGAA GTCATCAACG
2521TGGAGAGTTT GGTGCGGTTA AATTCCTACT TTGAGCAGTT TAAGGAAGTT TTGCCTGAGG
2581ATTGCCTGCC TCGGTCTCGC AGTCAGACGT GCCTGCCAGA GCTGCTGCGG TTTCTGGGTC
2641AGAACGTGCA TGCCCGGAAG AATAAGAACG TCGACATTCT CTGGCAAGCT GCTGAGATCT
2701GCCGCCGCCT TAATGGGGTC CGGTTCACCA GCTGCAAGAG CGCTAAGGAC CGTACAGCCA
2761TGTCGGTGAC ACTGGAGCAG TGCCTGATCC TGCAACACGA GCATGGCATG GCCCCGCAGG
2821TCTTCACCCA GGCCCTGGAG TGCATGCGCA GTGAGGGTTG TCGAAGAGAA AATACAATGA
2881AGAATGTTGG AAGTCGCAAA TATGCATTTA ATTCCCTGCA GCTGAAGGCT TTCCCCAAGC
2941ATTACAGGCC TCCCGAAGGG ACTTACGGAA AAGTTGAAAC GTGCCCAACT TTCTTGTACA
3001AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)