Transcript: Mouse XM_006496019.1

PREDICTED: Mus musculus inositol polyphosphate-4-phosphatase, type I (Inpp4a), transcript variant X14, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Inpp4a (269180)
Length:
5736
CDS:
443..3259

Additional Resources:

NCBI RefSeq record:
XM_006496019.1
NBCI Gene record:
Inpp4a (269180)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006496019.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000193104 CTTGGGAATCCGATCCAAATA pLKO.1 1057 CDS 100% 13.200 18.480 N Inpp4a n/a
2 TRCN0000173165 CCTTGGGAATCCGATCCAAAT pLKO.1 1056 CDS 100% 10.800 15.120 N Inpp4a n/a
3 TRCN0000216223 CTGTAGTGTCACATAAGATTC pLKO.1 3306 3UTR 100% 10.800 15.120 N Inpp4a n/a
4 TRCN0000176286 GCAGGAAATATCCAAGATCCA pLKO.1 545 CDS 100% 2.640 2.112 N Inpp4a n/a
5 TRCN0000217857 GTCAATAGCGTGGATAGTAAT pLKO.1 3435 3UTR 100% 13.200 9.240 N Inpp4a n/a
6 TRCN0000174490 CCTATCTTTCTAAGCAGCATT pLKO.1 725 CDS 100% 4.950 3.465 N Inpp4a n/a
7 TRCN0000194378 CGGATGCGAGTTCAAGATGAT pLKO.1 1466 CDS 100% 4.950 3.465 N Inpp4a n/a
8 TRCN0000174345 CAAGAATAAGAATGTGGACAT pLKO.1 2932 CDS 100% 4.050 2.835 N Inpp4a n/a
9 TRCN0000176386 CATCTACATACCACAGGACAT pLKO.1 1645 CDS 100% 4.050 2.835 N Inpp4a n/a
10 TRCN0000173404 GCCTTCTTTCAAGACTCCCTT pLKO.1 746 CDS 100% 2.640 1.848 N Inpp4a n/a
11 TRCN0000000540 CTCTTCAACGTGGGCATCAAT pLKO.1 2717 CDS 100% 5.625 3.375 N INPP4A n/a
12 TRCN0000001318 CTCTTCAACGTGGGCATCAAT pLKO.1 2717 CDS 100% 5.625 3.375 N INPP4A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006496019.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06455 pDONR223 100% 85.9% 92.3% None (many diffs) n/a
2 ccsbBroad304_06455 pLX_304 0% 85.9% 92.3% V5 (many diffs) n/a
3 TRCN0000478942 CTGGATTGAAGGTTCCATGGACCA pLX_317 13.6% 85.9% 92.3% V5 (many diffs) n/a
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