Construct: ORF ccsbBroadEn_06483

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008440.1_s300c1, BRDN0000392610
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KCNK1 (3775)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3775 KCNK1 potassium two pore domain c... NM_002245.4 99.9% 100% 900C>A
2 human 3775 KCNK1 potassium two pore domain c... XM_011544184.2 71.8% 64.5% (many diffs)
3 mouse 16525 Kcnk1 potassium channel, subfamil... NM_008430.2 88.7% 94.9% (many diffs)
4 mouse 16525 Kcnk1 potassium channel, subfamil... XM_006530716.2 85.7% 92.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1074
ORF length:
1008
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GCAGTCCCTG GCCGGCAGCT CGTGCGTGCG CCTGGTGGAG CGGCACCGCT
121CGGCCTGGTG CTTCGGCTTC CTGGTGCTGG GCTACTTGCT CTACCTGGTC TTCGGCGCAG
181TGGTCTTCTC CTCGGTGGAG CTGCCCTATG AGGACCTGCT GCGCCAGGAG CTGCGCAAGC
241TGAAGCGACG CTTCTTGGAG GAGCACGAGT GCCTGTCTGA GCAGCAGCTG GAGCAGTTCC
301TGGGCCGGGT GCTGGAGGCC AGCAACTACG GCGTGTCGGT GCTCAGCAAC GCCTCGGGCA
361ACTGGAACTG GGACTTCACC TCCGCGCTCT TCTTCGCCAG CACCGTGCTC TCCACCACAG
421GTTATGGCCA CACCGTGCCC TTGTCAGATG GAGGTAAGGC CTTCTGCATC ATCTACTCCG
481TCATTGGCAT TCCCTTCACC CTCCTGTTCC TGACGGCTGT GGTCCAGCGC ATCACCGTGC
541ACGTCACCCG CAGGCCGGTC CTCTACTTCC ACATCCGCTG GGGCTTCTCC AAGCAGGTGG
601TGGCCATCGT CCATGCCGTG CTCCTTGGGT TTGTCACTGT GTCCTGCTTC TTCTTCATCC
661CGGCCGCTGT CTTCTCAGTC CTGGAGGATG ACTGGAACTT CCTGGAATCC TTTTATTTTT
721GTTTTATTTC CCTGAGCACC ATTGGCCTGG GGGATTATGT GCCTGGGGAA GGCTACAATC
781AAAAATTCAG AGAGCTCTAT AAGATTGGGA TCACGTGTTA CCTGCTACTT GGCCTTATTG
841CCATGTTGGT AGTTCTGGAA ACCTTCTGTG AACTCCATGA GCTGAAAAAA TTCAGAAAAA
901TGTTCTATGT GAAGAAGGAC AAGGACGAGG ATCAGGTGCA CATCATAGAG CATGACCAAC
961TGTCATTCTC CTCGATCACA GACCAGGCAG CTGGCATGAA AGAGGACCAG AAGCAAAATG
1021AGCCTTTTGT GGCCACCCAG TCATCTGCCT GCGTGGATGG CCCTGCAAAC CATTGCCCAA
1081CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)