Construct: ORF ccsbBroadEn_06586
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015937.1_s300c1, BRDN0000392932
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MLLT3 (4300)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4300 | MLLT3 | MLLT3 super elongation comp... | NM_004529.4 | 99.7% | 99.2% | (many diffs) |
| 2 | human | 4300 | MLLT3 | MLLT3 super elongation comp... | NM_001286691.2 | 99.1% | 98.5% | (many diffs) |
| 3 | human | 4300 | MLLT3 | MLLT3 super elongation comp... | XM_017014726.2 | 91.2% | 90.8% | (many diffs) |
| 4 | human | 4300 | MLLT3 | MLLT3 super elongation comp... | XM_017014727.1 | 90.7% | 90.1% | (many diffs) |
| 5 | mouse | 70122 | Mllt3 | myeloid/lymphoid or mixed-l... | NM_027326.3 | 92.5% | 97.7% | (many diffs) |
| 6 | mouse | 70122 | Mllt3 | myeloid/lymphoid or mixed-l... | XM_006538250.2 | 91.9% | 97% | (many diffs) |
| 7 | mouse | 70122 | Mllt3 | myeloid/lymphoid or mixed-l... | XM_006538253.3 | 59.5% | 63.4% | (many diffs) |
| 8 | mouse | 70122 | Mllt3 | myeloid/lymphoid or mixed-l... | NM_029931.3 | 25.7% | 28.1% | (many diffs) |
| 9 | mouse | 70122 | Mllt3 | myeloid/lymphoid or mixed-l... | NM_001286158.1 | 21.8% | 23.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1770
- ORF length:
- 1704
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TAGCTCGTGG GCCGTGCAGG TGAAGCTGGA GCTGGGGCAC CGCGCCCAGG 121 TGAGGAAAAA ACCCACCGTG GAGGGCTTCA CCCACGACTG GATGGTGTTC GTACGCGGTC 181 CGGAGCACAG TAACATACAG CACTTTGTGG AGAAAGTCGT CTTCCACTTG CACGAAAGCT 241 TTCCTAGGCC AAAAAGAGTG TGCAAAGATC CACCTTACAA AGTAGAAGAA TCTGGGTATG 301 CTGGTTTCAT TTTGCCAATT GAAGTTTATT TTAAAAACAA GGAAGAACCT AGGAAAGTCC 361 GCTTTGATTA TGACTTATTC CTGCATCTTG AAGGCCATCC ACCAGTGAAT CACCTCCGCT 421 GTGAAAAGCT AACTTTCAAC AACCCCACAG AGGACTTTAG GAGAAAGTTG CTGAAGGCAG 481 GAGGGGACCC TAATAGGAGT ATTCATACCA GCAGCAGCAG CAGCAGCAGT AGNAGCAGCA 541 GCAGCAGCAG CAGCAGCAGC AGCAGTAGCA GCAGCAGCAG CGGCAGCAGC AGCAGCAGTA 601 GCAGCAGCAG TAGCAGCAGC AGCAGCAGCA GTAGTACCAG TTTTTCAAAG CCTCACAAAT 661 TAATGAAGGA GCACAAGGAA AAACCTTCTA AAGACTCCAG AGAACATAAA AGTGCCTTCA 721 AAGAACCTTC CAGGGATCAC AACAAATCTT CCAAAGAATC CTCTAAGAAA CCCAAAGAAA 781 ATAAACCACT GAAAGAAGAG AAAATAGTTC CTAAGATGGC CTTCAAGGAA CCTAAACCCA 841 TGTCAAAAGA GCCAAAACCA GATAGTAACT TACTCACCAT CACCAGTGGA CAAGATAAGA 901 AGGCTCCTAG TAAAAGGCCG CCCATTTCAG ATTCTGAAGA ACTCTCAGCC AAAAAAAGGA 961 AAAAGAGTAG CTCAGAGGCT TTATTTAAAA GTTTTTCTAG CGCACCACCA CTGATACTCA 1021 CTTGTTCTGC TGACAAAAAA CAGATAAAAG ATAAATCTCA TGTCAAGATG GGAAAGGTCA 1081 AAATTGAAAG TGAGACATCA GAGAAGAAGA AATCAACGTT ACCGCCATTT GATGATATTG 1141 TGGATCCCAA TGATTCAGAT GTGGAGGAGA ATATATCCTC TAAATCTGAT TCTGAACAAC 1201 CCAGTCCTGC CAGCTCCAGC TCCAGCTCCA GCTCCAGCTT CACACCATCC CAGACCAGGC 1261 AACAAGGTCC TTTGAGGTCT ATAATGAAAG ATCTGCATTC TGATGACAAT GAGGAGGAAT 1321 CAGATGAAGT GGAGGATAAC GACAATGACT CTGAAATGGA GAGGCCTGTA AATAGAGGAG 1381 GCAGCCGAAG TCGCAGAGTT AGCTTAAGTG ATGGCAGCGA TAGTGAAAGC AGTTCTGCTT 1441 CTTCACCCCT ACATCACGAA CCTCCACCAC CCTTACTAAA AACCAACAAC AACCAGATTC 1501 TTGAAGTGAA AAGTCCAATA AAGCAAAGCA AATCAGATAA GCAAATAAAG AATGGTGAAT 1561 GTGACAAGGC ATACCTAGAT GAACTGGTAG AGCTTCACAG AAGGTTAATG ACATTGAGAG 1621 AAAGACACAT TCTGCAGCAG ATCGTGAACC TTATAGAAGA AACTGGACAC TTTCATATCA 1681 CAAACACAAC ATTTGATTTT GATCTTTGCT CGCTGGACAA AACCACAGTC CGTAAACTAC 1741 AGAGTTACCT GGAAACAACT GGAACATCCT GCCCAACTTT CTTGTACAAA GTtggcatta 1801 taagaaagca ttgcttatca atttgttgca acgaac