Transcript: Human XM_017014726.2

PREDICTED: Homo sapiens MLLT3 super elongation complex subunit (MLLT3), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MLLT3 (4300)
Length:
5866
CDS:
244..1806

Additional Resources:

NCBI RefSeq record:
XM_017014726.2
NBCI Gene record:
MLLT3 (4300)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017014726.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000096699 CCAGTCATCATCTCTTGATAA pLKO.1 1977 3UTR 100% 13.200 18.480 N Mllt3 n/a
2 TRCN0000096700 CCGCTTTGATTATGACTTATT pLKO.1 537 CDS 100% 13.200 18.480 N Mllt3 n/a
3 TRCN0000005794 CCATTTGATGATATTGTGGAT pLKO.1 1303 CDS 100% 2.640 2.112 N MLLT3 n/a
4 TRCN0000005790 GCCAGTGTGTTACTCATCTTT pLKO.1 2845 3UTR 100% 5.625 3.938 N MLLT3 n/a
5 TRCN0000318814 GCCAGTGTGTTACTCATCTTT pLKO_005 2845 3UTR 100% 5.625 3.938 N MLLT3 n/a
6 TRCN0000005792 GCACAGTAACATACAGCACTT pLKO.1 363 CDS 100% 4.050 2.835 N MLLT3 n/a
7 TRCN0000318811 GCACAGTAACATACAGCACTT pLKO_005 363 CDS 100% 4.050 2.835 N MLLT3 n/a
8 TRCN0000005791 CCTCTAAGAAACCCAAAGAAA pLKO.1 938 CDS 100% 5.625 3.375 N MLLT3 n/a
9 TRCN0000318749 CCTCTAAGAAACCCAAAGAAA pLKO_005 938 CDS 100% 5.625 3.375 N MLLT3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017014726.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06586 pDONR223 100% 91.2% 90.8% None (many diffs) n/a
2 ccsbBroad304_06586 pLX_304 0% 91.2% 90.8% V5 (many diffs) n/a
3 TRCN0000476406 GACTACCTTAACAGATAGCATGAA pLX_317 18.4% 91.2% 90.8% V5 (many diffs) n/a
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