Construct: ORF ccsbBroadEn_06648

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005976.1_s300c1, BRDN0000395452
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNOT3 (4849)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4849 CNOT3 CCR4-NOT transcription comp... NM_014516.4 99.9% 100% 1122T>G
2 human 4849 CNOT3 CCR4-NOT transcription comp... XM_005278282.3 99.8% 99.8% 484_486delCAG;1125T>G
3 human 4849 CNOT3 CCR4-NOT transcription comp... XM_005278281.2 97.7% 97.7% 1122T>G;2161_2211del
4 human 4849 CNOT3 CCR4-NOT transcription comp... XM_005278279.2 97.6% 97.6% 484_486delCAG;1125T>G;2164_2214del
5 human 4849 CNOT3 CCR4-NOT transcription comp... XM_005278280.2 97.6% 97.6% 484_486delCAG;1125T>G;2164_2214del
6 human 4849 CNOT3 CCR4-NOT transcription comp... XM_011526992.2 96.6% 92.4% (many diffs)
7 human 4849 CNOT3 CCR4-NOT transcription comp... XM_011526993.3 90.2% 90% (many diffs)
8 human 4849 CNOT3 CCR4-NOT transcription comp... XR_254515.3 77.2% (many diffs)
9 human 4849 CNOT3 CCR4-NOT transcription comp... XR_002958318.1 77.1% (many diffs)
10 human 4849 CNOT3 CCR4-NOT transcription comp... XR_002958319.1 76.4% (many diffs)
11 mouse 232791 Cnot3 CCR4-NOT transcription comp... NM_146176.3 90.9% 95.2% (many diffs)
12 mouse 232791 Cnot3 CCR4-NOT transcription comp... XM_011250501.2 90.9% 95.2% (many diffs)
13 mouse 232791 Cnot3 CCR4-NOT transcription comp... XM_017322146.1 90.9% 95.2% (many diffs)
14 mouse 232791 Cnot3 CCR4-NOT transcription comp... XM_006539752.3 90.8% 95% (many diffs)
15 mouse 232791 Cnot3 CCR4-NOT transcription comp... XM_006539753.3 90.8% 95% (many diffs)
16 mouse 232791 Cnot3 CCR4-NOT transcription comp... XM_006539755.3 90.8% 95% (many diffs)
17 mouse 232791 Cnot3 CCR4-NOT transcription comp... XM_006539756.3 90.8% 95% (many diffs)
18 mouse 232791 Cnot3 CCR4-NOT transcription comp... XM_011250500.2 90.8% 95% (many diffs)
19 mouse 232791 Cnot3 CCR4-NOT transcription comp... XM_017322145.1 90.8% 95% (many diffs)
20 mouse 232791 Cnot3 CCR4-NOT transcription comp... XM_006539757.3 83.6% 84.7% (many diffs)
21 mouse 232791 Cnot3 CCR4-NOT transcription comp... XR_001785521.1 59.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2325
ORF length:
2259
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGACAAGCGC AAACTCCAAG GTGAGATTGA TCGCTGCCTC AAGAAGGTGT
121CCGAGGGCGT GGAGCAGTTT GAAGATATTT GGCAGAAGCT CCACAATGCA GCCAACGCGA
181ACCAGAAAGA AAAGTATGAG GCTGACCTAA AGAAGGAGAT TAAGAAGCTA CAACGGCTGA
241GGGACCAAAT CAAGACATGG GTAGCGTCCA ACGAGATCAA GGACAAGAGG CAGCTTATAG
301ACAACCGCAA GCTCATTGAG ACGCAAATGG AACGGTTCAA AGTTGTGGAA CGAGAGACCA
361AAACCAAAGC TTACAGCAAA GAGGGCCTGG GCCTGGCCCA GAAGGTAGAT CCTGCCCAGA
421AGGAGAAGGA AGAGGTTGGC CAGTGGCTCA CGAATACCAT CGACACGCTC AACATGCAGG
481TGGACCAGTT TGAGAGTGAA GTGGAGTCAC TGTCAGTGCA GACACGCAAG AAGAAGGGCG
541ACAAGGATAA GCAGGACCGG ATTGAGGGCT TGAAGCGGCA CATCGAGAAG CACCGCTACC
601ACGTGCGCAT GCTAGAGACC ATCCTGCGCA TGCTGGACAA TGACTCCATC CTCGTTGACG
661CCATCCGCAA GATCAAGGAC GACGTTGAGT ACTATGTTGA CTCATCCCAG GACCCCGACT
721TCGAGGAGAA CGAGTTTCTC TACGATGACC TGGACCTCGA GGACATTCCA CAGGCGCTGG
781TCGCCACCTC CCCCCCCAGC CACAGCCACA TGGAGGATGA GATCTTCAAC CAGTCCAGCA
841GCACGCCCAC CTCAACCACC TCCAGCTCTC CCATCCCGCC CAGCCCAGCC AACTGTACCA
901CGGAAAACTC TGAAGATGAT AAGAAGAGGG GACGTTCCAC AGACAGTGAA GTCAGCCAGT
961CTCCAGCCAA AAACGGCTCC AAGCCTGTCC ACAGCAACCA GCACCCTCAG TCCCCAGCTG
1021TGCCGCCCAC CTACCCCTCC GGCCCCCCGC CTGCTGCCTC TGCCTTGAGC ACCACTCCTG
1081GCAACAATGG GGTCCCCGCC CCCGCAGCAC CCCCAAGTGC CCTGGGCCCC AAGGCCAGTC
1141CAGCTCCCAG CCACAACTCG GGCACCCCTG CTCCCTATGC CCAGGCGGTG GCCCCACCAG
1201CTCCCAGTGG GCCCAGCACG ACCCAGCCCC GGCCCCCCAG CGTCCAGCCT AGCGGAGGCG
1261GAGGCGGCGG CAGCGGAGGC GGAGGGAGCA GCAGCAGTAG TAACAGCAGT GCCGGTGGAG
1321GGGCTGGCAA GCAGAATGGC GCCACCAGTT ACAGCTCAGT TGTGGCAGAC AGCCCGGCAG
1381AGGTGGCTTT GAGCAGCAGT GGGGGCAACA ATGCCAGCAG CCAGGCCTTG GGCCCCCCTT
1441CCGGCCCCCA CAACCCACCT CCCAGCACCT CGAAGGAACC CAGTGCGGCA GCCCCAACGG
1501GGGCTGGGGG CGTGGCCCCA GGCTCAGGGA ACAACTCAGG GGGACCCAGC CTCCTGGTGC
1561CACTGCCTGT GAATCCTCCC AGCTCCCCAA CGCCCAGCTT CAGTGATGCC AAGGCAGCCG
1621GTGCCCTGCT CAATGGGCCT CCACAGTTCA GCACCGCCCC AGAAATCAAG GCCCCTGAGC
1681CTCTGAGCTC CTTGAAGTCC ATGGCGGAAC GGGCAGCCAT CAGCTCTGGC ATTGAGGACC
1741CTGTGCCAAC GCTGCACCTG ACCGAGCGAG ACATCATCCT GAGCAGTACA TCAGCACCTC
1801CGGCCTCAGC CCAGCCGCCC CTGCAGCTGT CAGAGGTGAA CATACCGCTG TCGCTGGGTG
1861TCTGTCCACT GGGCCCTGTG CCCCTCACCA AGGAGCAGCT CTATCAGCAG GCCATGGAAG
1921AGGCCGCCTG GCACCACATG CCTCACCCCT CTGACTCTGA GCGTATTCGG CAGTACCTCC
1981CCCGGAACCC CTGTCCGACG CCCCCCTACC ACCACCAGAT GCCACCCCCA CACTCGGACA
2041CTGTGGAATT CTACCAGCGC CTGTCGACCG AGACACTCTT CTTCATCTTC TACTATCTGG
2101AGGGCACTAA GGCACAGTAT CTGGCAGCCA AGGCCCTAAA GAAGCAGTCA TGGCGATTCC
2161ACACCAAGTA CATGATGTGG TTCCAGAGGC ACGAGGAGCC CAAGACCATC ACTGACGAGT
2221TTGAGCAGGG CACCTACATC TACTTTGACT ACGAGAAGTG GGGCCAGCGG AAGAAGGAAG
2281GCTTCACCTT TGAGTACCGC TACCTGGAGG ACCGGGACCT CCAGTGCCCA ACTTTCTTGT
2341ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)