Construct: ORF ccsbBroadEn_06665

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014327.1_s300c1, BRDN0000385281
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
OAT (4942)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4942 OAT ornithine aminotransferase NM_000274.4 99.8% 100% 15A>G;1311G>A
2 human 4942 OAT ornithine aminotransferase NM_001322965.2 99.8% 100% 15A>G;1311G>A
3 human 4942 OAT ornithine aminotransferase NM_001322966.2 99.8% 100% 15A>G;1311G>A
4 human 4942 OAT ornithine aminotransferase NM_001322967.2 99.8% 100% 15A>G;1311G>A
5 human 4942 OAT ornithine aminotransferase NM_001322968.2 99.8% 100% 15A>G;1311G>A
6 human 4942 OAT ornithine aminotransferase NM_001322969.2 99.8% 100% 15A>G;1311G>A
7 human 4942 OAT ornithine aminotransferase NM_001322970.2 99.8% 100% 15A>G;1311G>A
8 human 4942 OAT ornithine aminotransferase NM_001322971.2 75.4% 75.6% 15A>G;197_198ins321;990G>A
9 human 4942 OAT ornithine aminotransferase NM_001171814.1 68.4% 68.5% 0_1ins414;897G>A
10 human 4942 OAT ornithine aminotransferase NM_001322974.2 54.3% 54.4% 0_1ins600;711G>A
11 human 4942 OAT ornithine aminotransferase XM_017016279.1 54.3% 54.4% 0_1ins600;711G>A
12 mouse 18242 Oat ornithine aminotransferase NM_016978.2 84.3% 90.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1383
ORF length:
1317
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAGAAG
61TTGGCATGTT TTCCAAACTG GCACATTTGC AGAGGTTTGC TGTACTTAGT CGCGGAGTTC
121ATTCTTCAGT GGCTTCTGCT ACATCTGTTG CAACTAAAAA AACAGTCCAA GGCCCTCCAA
181CCTCTGATGA CATTTTTGAA AGGGAATATA AGTATGGTGC ACACAACTAC CATCCTTTAC
241CTGTAGCCCT GGAGAGAGGA AAAGGTATTT ACTTATGGGA TGTAGAAGGC AGAAAATATT
301TTGACTTCCT GAGTTCTTAC AGTGCTGTCA ACCAAGGGCA TTGTCACCCC AAGATTGTGA
361ATGCTCTGAA GAGTCAAGTG GACAAATTGA CCTTAACATC TAGAGCTTTC TATAATAACG
421TACTTGGTGA ATATGAGGAG TATATTACTA AACTTTTCAA CTACCACAAA GTTCTTCCTA
481TGAATACAGG AGTGGAGGCT GGAGAGACTG CCTGTAAACT AGCTCGTAAG TGGGGCTATA
541CCGTGAAGGG CATTCAGAAA TACAAAGCAA AGATTGTTTT TGCAGCTGGG AACTTCTGGG
601GTAGGACGTT GTCTGCTATC TCCAGTTCCA CAGACCCAAC CAGTTACGAT GGTTTTGGAC
661CATTTATGCC GGGATTCGAC ATCATTCCCT ATAATGATCT GCCCGCACTG GAGCGTGCTC
721TTCAGGATCC AAATGTGGCT GCGTTCATGG TAGAACCAAT TCAGGGTGAA GCAGGCGTTG
781TTGTTCCGGA TCCAGGTTAC CTAATGGGAG TGCGAGAGCT CTGCACCAGG CACCAGGTTC
841TCTTTATTGC TGATGAAATA CAGACAGGAT TGGCCAGAAC TGGTAGATGG CTGGCTGTTG
901ATTATGAAAA TGTCAGACCT GATATAGTCC TCCTTGGAAA GGCCCTTTCT GGGGGCTTAT
961ACCCTGTGTC TGCAGTGCTG TGTGATGATG ACATCATGCT GACCATTAAG CCAGGGGAGC
1021ATGGGTCCAC ATACGGTGGC AATCCACTAG GCTGCCGAGT GGCCATCGCA GCCCTTGAGG
1081TTTTAGAAGA AGAAAACCTT GCTGAAAATG CAGACAAATT GGGCATTATC TTGAGAAATG
1141AACTCATGAA GCTACCTTCT GATGTTGTAA CTGCCGTAAG AGGAAAAGGA TTATTAAACG
1201CTATTGTCAT TAAAGAAACC AAAGATTGGG ATGCTTGGAA GGTGTGTCTA CGACTTCGAG
1261ATAATGGACT TCTGGCCAAG CCAACCCATG GCGACATTAT CAGGTTTGCG CCTCCGCTGG
1321TGATCAAGGA GGATGAGCTT CGAGAGTCCA TTGAAATTAT TAACAAGACC ATCTTATCTT
1381TCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1441gcaacgaac

Download FASTA (ORF) (Full)