Transcript: Mouse NM_016978.2

Mus musculus ornithine aminotransferase (Oat), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Oat (18242)
Length:
2155
CDS:
141..1460

Additional Resources:

NCBI RefSeq record:
NM_016978.2
NBCI Gene record:
Oat (18242)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_016978.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000119738 CCGACCAGTTATGATGGCTTT pLKO.1 711 CDS 100% 4.050 5.670 N Oat n/a
2 TRCN0000326025 CCGACCAGTTATGATGGCTTT pLKO_005 711 CDS 100% 4.050 5.670 N Oat n/a
3 TRCN0000119737 GCAGTCATTTACGTGCGTCTT pLKO.1 1713 3UTR 100% 4.050 5.670 N Oat n/a
4 TRCN0000325954 GCAGTCATTTACGTGCGTCTT pLKO_005 1713 3UTR 100% 4.050 5.670 N Oat n/a
5 TRCN0000119739 GATGAGATAATGCTGACCATT pLKO.1 1062 CDS 100% 4.950 3.465 N Oat n/a
6 TRCN0000325955 GATGAGATAATGCTGACCATT pLKO_005 1062 CDS 100% 4.950 3.465 N Oat n/a
7 TRCN0000119741 CCTTGGTGAATACGAGGAGTA pLKO.1 497 CDS 100% 4.050 2.835 N Oat n/a
8 TRCN0000326028 CCTTGGTGAATACGAGGAGTA pLKO_005 497 CDS 100% 4.050 2.835 N Oat n/a
9 TRCN0000119740 CTTTGAAACCATCCCATATAA pLKO.1 749 CDS 100% 15.000 9.000 N Oat n/a
10 TRCN0000326026 CTTTGAAACCATCCCATATAA pLKO_005 749 CDS 100% 15.000 9.000 N Oat n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_016978.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15514 pDONR223 0% 84.5% 90.8% None (many diffs) n/a
2 ccsbBroad304_15514 pLX_304 0% 84.5% 90.8% V5 (many diffs) n/a
3 TRCN0000472176 AGTCCCTCATAACCATTTATAACC pLX_317 35.3% 84.5% 90.8% V5 (many diffs) n/a
4 ccsbBroadEn_06665 pDONR223 100% 84.3% 90.8% None (many diffs) n/a
5 ccsbBroad304_06665 pLX_304 0% 84.3% 90.8% V5 (many diffs) n/a
6 TRCN0000473531 GATCACCGAGTCTTGAAACCCTTA pLX_317 34.8% 84.3% 90.8% V5 (many diffs) n/a
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