Construct: ORF ccsbBroadEn_06670
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000518.1_s300c1, BRDN0000385163
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OGG1 (4968)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_002542.5 | 99.9% | 99.7% | 977C>G |
| 2 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | XM_011533760.2 | 93.8% | 92.5% | (many diffs) |
| 3 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | XM_017006496.2 | 93.8% | 92.5% | (many diffs) |
| 4 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_016819.3 | 93.3% | 92.7% | (many diffs) |
| 5 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_016829.2 | 92.9% | 91.8% | (many diffs) |
| 6 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_016828.2 | 92.8% | 91% | (many diffs) |
| 7 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_001354651.1 | 87.6% | 86.9% | (many diffs) |
| 8 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_016820.3 | 84% | 79% | 948_964del;994C>G;1053_1230del |
| 9 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | XM_017006499.2 | 81.1% | 70.5% | (many diffs) |
| 10 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_016826.2 | 79.3% | 63.4% | (many diffs) |
| 11 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_001354652.1 | 78.6% | 73.6% | (many diffs) |
| 12 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_016821.2 | 78.6% | 75.7% | (many diffs) |
| 13 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | XM_017006495.2 | 76.1% | 68.2% | (many diffs) |
| 14 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | XM_017006497.2 | 75.6% | 76.2% | (many diffs) |
| 15 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_001354650.1 | 73.8% | 71.3% | (many diffs) |
| 16 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | XM_017006493.2 | 72.7% | 66.8% | 746_747ins151;826C>G;885_1062del |
| 17 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | XM_017006494.2 | 72.3% | 70.3% | (many diffs) |
| 18 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | XR_001740156.2 | 70.1% | 1_296del;861_868delGGTGAGTA;1243_1244ins96 | |
| 19 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_001354649.1 | 67.7% | 67.5% | 564_565ins333;644C>G |
| 20 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_001354648.1 | 61.1% | 60.5% | (many diffs) |
| 21 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NM_016827.2 | 56% | 55% | (many diffs) |
| 22 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NR_148932.1 | 45.2% | (many diffs) | |
| 23 | human | 4968 | OGG1 | 8-oxoguanine DNA glycosylase | NR_148930.1 | 41.7% | (many diffs) | |
| 24 | mouse | 18294 | Ogg1 | 8-oxoguanine DNA-glycosylase 1 | NM_010957.4 | 83.6% | 84.9% | (many diffs) |
| 25 | mouse | 18294 | Ogg1 | 8-oxoguanine DNA-glycosylase 1 | XM_006505720.1 | 59.7% | 54.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1101
- ORF length:
- 1035
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TGCCCGCGCG CTTCTGCCCA GGCGCATGGG GCATCGTACT CTAGCCTCCA 121 CTCCTGCCCT GTGGGCCTCC ATCCCGTGCC CTCGCTCTGA GCTGCGCCTG GACCTGGTTC 181 TGCCTTCTGG ACAATCTTTC CGGTGGAGGG AGCAAAGTCC TGCACACTGG AGTGGTGTAC 241 TAGCGGATCA AGTATGGACA CTGACTCAGA CTGAGGAGCA GCTCCACTGC ACTGTGTACC 301 GAGGAGACAA GAGCCAGGCT AGCAGGCCCA CACCAGACGA GCTGGAGGCC GTGCGCAAGT 361 ACTTCCAGCT AGATGTTACC CTGGCTCAAC TGTATCACCA CTGGGGTTCC GTGGACTCCC 421 ACTTCCAAGA GGTGGCTCAG AAATTCCAAG GTGTGCGACT GCTGCGACAA GACCCCATCG 481 AATGCCTTTT CTCTTTTATC TGTTCCTCCA ACAACAACAT CGCCCGCATC ACTGGCATGG 541 TGGAGCGGCT GTGCCAGGCT TTTGGACCTC GGCTCATCCA GCTTGATGAT GTCACCTACC 601 ATGGCTTCCC CAGCCTGCAG GCCCTGGCTG GGCCAGAGGT GGAGGCTCAT CTCAGGAAGC 661 TGGGCCTGGG CTATCGTGCC CGTTACGTGA GTGCCAGTGC CCGAGCCATC CTGGAAGAAC 721 AGGGCGGGCT AGCCTGGCTG CAGCAGCTAC GAGAGTCCTC ATATGAGGAG GCCCACAAGG 781 CCCTCTGCAT CCTGCCTGGA GTGGGCACCA AGGTGGCTGA CTGCATCTGC CTGATGGCCC 841 TAGACAAGCC CCAGGCTGTG CCCGTGGATG TCCATATGTG GCACATTGCC CAACGTGACT 901 ACAGCTGGCA CCCTACCACG TCCCAGGCGA AGGGACCGAG CCCCCAGACC AACAAGGAAC 961 TGGGAAACTT TTTCCGGAGC CTGTGGGGAC CTTATGCTGG CTGGGCCCAA GCGGTGCTGT 1021 TCAGTGCCGA CCTGCGCCAA TGCCGCCATG CTCAGGAGCC ACCAGCAAAG CGCAGAAAGG 1081 GTTCCAAAGG GCCGGAAGGC TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1141 attgcttatc aatttgttgc aacgaac