Construct: ORF ccsbBroadEn_06715

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016541.1_s300c1, BRDN0000394928
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VIT (5212)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5212 VIT vitrin NM_001177970.2 99.7% 99.5% (many diffs)
2 human 5212 VIT vitrin NM_001177971.2 97.3% 96.3% (many diffs)
3 human 5212 VIT vitrin NM_001177969.1 96.7% 96.3% (many diffs)
4 human 5212 VIT vitrin NM_001328661.2 96.2% 94% (many diffs)
5 human 5212 VIT vitrin NM_053276.4 94.6% 94.2% (many diffs)
6 human 5212 VIT vitrin XM_011532906.2 87.7% 86.6% (many diffs)
7 human 5212 VIT vitrin XM_017004326.2 86.7% 84.6% (many diffs)
8 human 5212 VIT vitrin XM_011532905.2 85.3% 84.9% (many diffs)
9 human 5212 VIT vitrin XM_017004327.1 68% 67.6% (many diffs)
10 human 5212 VIT vitrin XM_017004328.1 61.9% 59.7% (many diffs)
11 human 5212 VIT vitrin NM_001177972.2 26.9% 25.1% (many diffs)
12 mouse 74199 Vit vitrin XM_017317699.1 42.7% 43% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2040
ORF length:
1971
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGGACTGTT GTTCTCACTA TGAAGGCATC TGTTATTGAA ATGTTCCTTG
121TTTTGCTGGT GACTGGAGTA CATTCAAACA AAGAAACGGC AAAGAAGATT AAAAGGCCCA
181AGTTCACTGT GCCTCAGATC AACTGCGATG TCAAAGCCGG AAAGATCATC GATCCTGAGT
241TCATTGTGAA ATGTCCAGCA GGATGCCAAG ACCCCAAATA CCATGTTTAT GGCACTGACG
301TGTATGCATC CTACTCCAGT GTGTGTGGCG CTGCCGTACA CAGTGGTGTG CTTGATAATT
361CAGGAGGGAA AATACTTGTT CGGAAGGTTG CTGGACAGTC TGGTTACAAA GGGAGTTATT
421CCAACGGTGT CCAATCGTTA TCCCTACCAC GATGGAGAGA ATCCTTTATC GTCTTAGAAA
481GTAAACCCAA AAAGGGTGTA ACCTACCCAT CAGCTCTTAC ATACTCATCA TCGAAAAGTC
541CAGCTGCCCA AGCAGGTGAG ACCACAAAAG CCTATCAGAG GCCACCTATT CCAGGGACAA
601CTGCACAGCC GGTCACTCTG ATGCAGCTTC TGGCTGTCAC TGTAGCTGTG GCCACCCCCA
661CCACCTTGCC AAGGCCATCC CCTTCTGCTG CTTCTACCAC CAGCATCCCC AGACCACAAT
721CAGTGGGCCA CAGGAGCCAG GAGATGGATC TCTGGTCCAC TGCCACCTAC ACAAGCAGCC
781AAAACAGGCC CAGAGCTGAT CCAGGTATCC AAAGGCAAGA TCCTTCAGGA GCTGCCTTCC
841AGAAACCTGT TGGAGCGGAT GTCAGCCTGG ACTGCAAAAT TGACTTGTCG TTTTTAATTG
901ATGGGAGCAC CAGCATTGGC AAACGGCGAT TCCGAATCCA GAAGCAGCTC CTGGCTGATG
961TTGCCCAAGC TCTTGACATT GGCCCTGCCG GTCCACTGAT GGGTGTTGTC CAGTATGGAG
1021ACAACCCTGC TACTCACTTT AACCTCAAGA CACACACGAA CTCTCGAGAT CTGAAGACAG
1081CCATAGAGAA AATTACTCAG AGAGGAGGAC TTTCTAATGT AGGTCGGGCC ATCTCCTTTG
1141TGACCAAGAA CTTCTTTTCC AAAGCCAATG GAAACAGAAG CGGGGCTCCC AATGTGGTGG
1201TGGTGATGGT GGATGGCTGG CCCACGGACA AAGTGGAGGA GGCTTCAAGA CTTGCGAGAG
1261AGTCAGGAAT CAACATTTTC TTCATCACCA TTGAAGGTGC TGCTGAAAAT GAGAAGCAGT
1321ATGTGGTGGA GCCCAACTTT GCAAACAAGG CCGTGTGCAG AACAAACGGC TTCTACTCGC
1381TCCACGTGCA GAGCTGGTTT GGCCTCCACA AGACCCTGCA GCCTCTGGTG AAGCGGGTCT
1441GCGACACTGA CCGCCTGGCC TGCAGCAAGA CCTGCTTGAA CTCGGCTGAC ATTGGCTTCG
1501TCATCGACGG CTCCAGCAGT GTGGGGACGG GCAACTTCCG CACCGTCCTC CAGTTTGTGA
1561CCAACCTCAC CAAAGAGTTT GAGATTTCCG ACACGGACAC GCGCATCGGG GCCGTGCAGT
1621ACACCTACGA ACAGCGGCTG GAGTTTGGGT TCGACAAGTA CAGCAGCAGG CCTGACATCA
1681TCAACGCCAT CAAGAGGGTG GGCTACTGGA GTGGTGGCAC CAGCACGGGG GCTGCCATCA
1741ACTTCGCCCT GGAGCAGCTC TTCAAGAAGT CCAAGCCCAA CAAGAGGAAG TTAATGATCC
1801TCATCACCGA CGGGAGGTCC TACGACGACG TCCGGATCCC AGCCATGGCT GCCCATCTGA
1861AGGGAGTGAT CACCTATGCG ATAGGCGTTG CCTGGGCTGC CCAAGAGGAG CTAGAAGTCA
1921TTGCCACTCA CCCCGCCAGA GACCACTCCT TCTTTGTGGA CGAGTTTGAC AACCTCTATC
1981AGTATGTCCC CAGGATCATC CAGAACATTT GTACAGAGTT CAACTCACAG CCTCGGAACT
2041TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
2101acgaac

Download FASTA (ORF) (Full)

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