Construct: ORF ccsbBroadEn_06737
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001251.1_s300c1, BRDN0000457170
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PLG (5340)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5340 | PLG | plasminogen | NM_000301.3 | 99.9% | 99.8% | 2027T>A |
| 2 | human | 5340 | PLG | plasminogen | NM_001168338.1 | 16.7% | 16.7% | 408_408delGins2023 |
| 3 | human | 5343 | PLGLB1 | plasminogen like B1 | NM_001032392.2 | 11.5% | 11.3% | (many diffs) |
| 4 | human | 5342 | PLGLB2 | plasminogen like B2 | NM_002665.4 | 11.5% | 11.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2499
- ORF length:
- 2430
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAACATAAG GAAGTGGTTC TTCTACTTCT TTTATTTCTG AAATCAGGTC 121 AAGGAGAGCC TCTGGATGAC TATGTGAATA CCCAGGGGGC TTCACTGTTC AGTGTCACTA 181 AGAAGCAGCT GGGAGCAGGA AGTATAGAAG AATGTGCAGC AAAATGTGAG GAGGACGAAG 241 AATTCACCTG CAGGGCATTC CAATATCACA GTAAAGAGCA ACAATGTGTG ATAATGGCTG 301 AAAACAGGAA GTCCTCCATA ATCATTAGGA TGAGAGATGT AGTTTTATTT GAAAAGAAAG 361 TGTATCTCTC AGAGTGCAAG ACTGGGAATG GAAAGAACTA CAGAGGGACG ATGTCCAAAA 421 CAAAAAATGG CATCACCTGT CAAAAATGGA GTTCCACTTC TCCCCACAGA CCTAGATTCT 481 CACCTGCTAC ACACCCCTCA GAGGGACTGG AGGAGAACTA CTGCAGGAAT CCAGACAACG 541 ATCCGCAGGG GCCCTGGTGC TATACTACTG ATCCAGAAAA GAGATATGAC TACTGCGACA 601 TTCTTGAGTG TGAAGAGGAA TGTATGCATT GCAGTGGAGA AAACTATGAC GGCAAAATTT 661 CCAAGACCAT GTCTGGACTG GAATGCCAGG CCTGGGACTC TCAGAGCCCA CACGCTCATG 721 GATACATTCC TTCCAAATTT CCAAACAAGA ACCTGAAGAA GAATTACTGT CGTAACCCCG 781 ATAGGGAGCT GCGGCCTTGG TGTTTCACCA CCGACCCCAA CAAGCGCTGG GAACTTTGTG 841 ACATCCCCCG CTGCACAACA CCTCCACCAT CTTCTGGTCC CACCTACCAG TGTCTGAAGG 901 GAACAGGTGA AAACTATCGC GGGAATGTGG CTGTTACCGT GTCCGGGCAC ACCTGTCAGC 961 ACTGGAGTGC ACAGACCCCT CACACACATA ACAGGACACC AGAAAACTTC CCCTGCAAAA 1021 ATTTGGATGA AAACTACTGC CGCAATCCTG ACGGAAAAAG GGCCCCATGG TGCCATACAA 1081 CCAACAGCCA AGTGCGGTGG GAGTACTGTA AGATACCGTC CTGTGACTCC TCCCCAGTAT 1141 CCACGGAACA ATTGGCTCCC ACAGCACCAC CTGAGCTAAC CCCTGTGGTC CAGGACTGCT 1201 ACCATGGTGA TGGACAGAGC TACCGAGGCA CATCCTCCAC CACCACCACA GGAAAGAAGT 1261 GTCAGTCTTG GTCATCTATG ACACCACACC GGCACCAGAA GACCCCAGAA AACTACCCAA 1321 ATGCTGGCCT GACAATGAAC TACTGCAGGA ATCCAGATGC CGATAAAGGC CCCTGGTGTT 1381 TTACCACAGA CCCCAGCGTC AGGTGGGAGT ACTGCAACCT GAAAAAATGC TCAGGAACAG 1441 AAGCGAGTGT TGTAGCACCT CCGCCTGTTG TCCTGCTTCC AGATGTAGAG ACTCCTTCCG 1501 AAGAAGACTG TATGTTTGGG AATGGGAAAG GATACCGAGG CAAGAGGGCG ACCACTGTTA 1561 CTGGGACGCC ATGCCAGGAC TGGGCTGCCC AGGAGCCCCA TAGACACAGC ATTTTCACTC 1621 CAGAGACAAA TCCACGGGCG GGTCTGGAAA AAAATTACTG CCGTAACCCT GATGGTGATG 1681 TAGGTGGTCC CTGGTGCTAC ACGACAAATC CAAGAAAACT TTACGACTAC TGTGATGTCC 1741 CTCAGTGTGC GGCCCCTTCA TTTGATTGTG GGAAGCCTCA AGTGGAGCCG AAGAAATGTC 1801 CTGGAAGGGT TGTAGGGGGG TGTGTGGCCC ACCCACATTC CTGGCCCTGG CAAGTCAGTC 1861 TTAGAACAAG GTTTGGAATG CACTTCTGTG GAGGCACCTT GATATCCCCA GAGTGGGTGT 1921 TGACTGCTGC CCACTGCTTG GAGAAGTCCC CAAGGCCTTC ATCCTACAAG GTCATCCTGG 1981 GTGCACACCA AGAAGTGAAT CTCGAACCGC ATGTTCAGGA AATAGAAGTG TCTAGGCTGT 2041 TCTTGGAGCC CACACGAAAA GATATTGCCT TGCTAAAGCT AAGCAGTCCT GCCGACATCA 2101 CTGACAAAGT AATCCCAGCT TGTCTGCCAT CCCCAAATTA TGTGGTCGCT GACCGGACCG 2161 AATGTTTCAT CACTGGCTGG GGAGAAACCC AAGGTACTTT TGGAGCTGGC CTTCTCAAGG 2221 AAGCCCAGCT CCCTGTGATT GAGAATAAAG TGTGCAATCG CTATGAGTTT CTGAATGGAA 2281 GAGTCCAATC CACCGAACTC TGTGCTGGGC ATTTGGCCGG AGGCACTGAC AGTTGCCAGG 2341 GTGACAGTGG AGGTCCTCTG GTTTGCTTCG AGAAGGACAA ATACATTTTA CAAGGAGTCA 2401 CTTCTTGGGG TCTTGGCTGT GCACGCCCCA ATAAGCCTGG TGTCTATGTT CGTGTTTCAA 2461 GGTTTGTTAC TTGGATTGAG GGAGTGATGA GAAATAATTT GCCAACTTTC TTGTACAAAG 2521 TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac