Construct: ORF ccsbBroadEn_06815

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005174.1_s300c1, BRDN0000457352
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTPN14 (5784)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5784 PTPN14 protein tyrosine phosphatas... NM_005401.5 99.9% 100% 978A>G;3252A>G
2 human 5784 PTPN14 protein tyrosine phosphatas... XM_017001941.1 99.9% 100% 978A>G;3252A>G
3 human 5784 PTPN14 protein tyrosine phosphatas... XM_024448759.1 99.9% 100% 978A>G;3252A>G
4 mouse 19250 Ptpn14 protein tyrosine phosphatas... NM_008976.2 85.6% 91.4% (many diffs)
5 mouse 19250 Ptpn14 protein tyrosine phosphatas... XM_006497129.3 85.6% 91.4% (many diffs)
6 mouse 19250 Ptpn14 protein tyrosine phosphatas... XM_006497130.3 85.6% 91.4% (many diffs)
7 mouse 19250 Ptpn14 protein tyrosine phosphatas... XM_006497131.3 85.6% 91.4% (many diffs)
8 mouse 19250 Ptpn14 protein tyrosine phosphatas... XM_006497133.3 85.6% 91.4% (many diffs)
9 mouse 19250 Ptpn14 protein tyrosine phosphatas... XM_006497134.3 78% 83.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3630
ORF length:
3561
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCTTTTGGT CTGAAGCTCC GCCGGACACG GCGCTACAAC GTCCTGAGCA
121AGAACTGCTT TGTCACACGG ATTCGCCTGC TGGACAGCAA TGTTATCGAG TGCACGCTGT
181CGGTGGAAAG CACAGGGCAA GAATGCCTGG AGGCTGTGGC CCAGAGGCTG GAGCTGCGAG
241AGACGCACTA CTTTGGCCTT TGGTTTCTCA GCAAGAGCCA GCAAGCACGA TGGGTGGAGC
301TGGAGAAACC TCTGAAGAAA CATCTGGACA AATTCGCTAA TGAGCCTTTG CTTTTCTTTG
361GAGTCATGTT CTATGTGCCA AATGTGTCAT GGCTTCAGCA AGAGGCCACA AGATATCAGT
421ATTACCTGCA AGTCAAAAAA GATGTGCTTG AAGGGCGATT ACGATGTACA TTGGACCAGG
481TGATTCGGCT AGCCGGCCTA GCTGTGCAAG CTGATTTTGG AGACTATAAT CAGTTTGATT
541CTCAAGATTT CCTCAGAGAG TATGTGCTAT TTCCTATGGA TTTGGCCCTG GAAGAGGCTG
601TTCTGGAGGA GCTGACCCAG AAGGTAGCCC AAGAACACAA AGCCCACAGT GGAATCCTGC
661CAGCAGAAGC TGAACTGATG TACATCAATG AAGTTGAACG TTTGGATGGA TTTGGACAGG
721AAATCTTCCC TGTAAAGGAC AATCATGGAA ACTGTGTACA CCTTGGCATT TTCTTTATGG
781GGATTTTCGT GAGGAACAGA ATTGGAAGAC AAGCGGTAAT ATACAGGTGG AATGACATGG
841GGAATATCAC TCATAACAAG TCGACCATTC TAGTGGAGCT CATCAACAAA GAAGAGACTG
901CCCTCTTTCA CACGGATGAT ATCGAAAATG CCAAGTATAT TTCTCGGTTG TTTGCCACAC
961GACACAAGTT TTACAAACAA AACAAAATCT GCACTGAACA GTCAAATTCT CCACCCCCCA
1021TCAGACGCCA GCCCACCTGG AGCCGGTCCT CTCTGCCCAG GCAGCAGCCG TACATCCTGC
1081CTCCCGTTCA CGTCCAGTGT GGTGAGCACT ACTCGGAAAC GCACACCTCG CAAGACAGCA
1141TTTTTCATGG GAATGAAGAA GCCTTGTATT GCAACTCTCA CAACAGCCTG GACTTAAATT
1201ATTTAAATGG CACTGTCACC AATGGCAGCG TGTGTAGCGT TCACAGCGTC AACTCCCTCA
1261ACTGCTCGCA AAGTTTCATC CAGGCCTCCC CTGTATCCTC CAACCTCAGT ATCCCTGGGA
1321GTGACATCAT GCGGGCCGAC TACATCCCGA GCCACCGGCA CAGCGCGATC ATCGTGCCCT
1381CGTACAGGCC AACCCCCGAT TATGAGACAG TCATGCGCCA GATGAAGAGG GGGATCCTGC
1441ATACAGACAG CCAGAGCCAG TCTCTGAGAA ACCTCAACAT TATCAACACC CATGCCTACA
1501ACCAGCCAGA GGATCTGGTG TACAGCCAAC CGGAGATGCG GGAGAGGCAC CCCTACACTG
1561TCCCTTATGG GCCACAGGGG GTCTACAGCA ACAAACTTGT CAGTCCATCT GACCAGAGGA
1621ACCCAAAGAA TAATGTGGTA CCAAGCAAGC CGGGGGCAAG CGCCATCTCG CACACGGTGA
1681GCACCCCAGA GCTGGCCAAC ATGCAGCTGC AGGGCAGCCA TAACTACAGC ACGGCCCACA
1741TGCTTAAGAA CTATCTCTTC AGGCCACCGC CCCCCTACCC ACGGCCACGA CCTGCCACCA
1801GCACCCCAGA CCTGGCCAGC CACCGCCACA AGTACGTCAG CGGCAGCAGC CCGGACCTGG
1861TGACCCGGAA GGTGCAGCTC TCGGTGAAGA CCTTCCAAGA GGACAGCTCT CCGGTGGTTC
1921ATCAGTCTCT CCAGGAGGTG AGCGAGCCCC TCACGGCCAC CAAGCACCAC GGCACTGTGA
1981ACAAGCGCCA CAGCCTGGAG GTGATGAACA GCATGGTGCG GGGCATGGAG GCCATGACGC
2041TCAAGTCGCT CCACCTCCCC ATGGCTCGCC GCAACACGCT CCGGGAGCAG GGACCGCCCG
2101AGGAGGGGTC AGGCAGCCAC GAGGTCCCCC AGCTCCCTCA GTATCACCAC AAGAAGACCT
2161TCTCTGATGC CACTATGCTA ATCCACAGCA GCGAGAGTGA GGAGGAGGAG GAGGAGGCTC
2221CAGAATCGGT GCCCCAGATC CCCATGCTCC GGGAGAAGAT GGAGTACAGT GCCCAGCTGC
2281AGGCGGCCCT GGCCCGCATC CCCAACAAGC CCCCGCCTGA GTACCCCGGT CCAAGGAAGA
2341GTGTGAGCAA TGGGGCTCTG AGGCAGGACC AAGCCAGCCT TCCTCCCGCC ATGGCCAGAG
2401CCAGGGTGCT GAGGCATGGG CCAGCCAAGG CCATCAGCAT GTCTCGGACT GACCCGCCGG
2461CTGTCAACGG GGCCTCTCTC GGCCCATCCA TCTCGGAACC CGACCTGACT AGTGTGAAGG
2521AGCGGGTCAA AAAAGAGCCT GTGAAGGAGA GACCTGTGTC TGAAATGTTT TCCCTGGAAG
2581ACAGCATTAT AGAGAGAGAG ATGATGATCA GGAATCTAGA GAAGCAGAAG ATGGCAGGCC
2641TGGAGGCACA GAAGAGGCCG CTGATGTTGG CAGCATTGAA TGGGCTCTCG GTGGCTCGAG
2701TCTCAGGGCG GGAAGAGAAT CGAGTTGATG CCACCCGGGT TCCCATGGAC GAGAGGTTCA
2761GAACCCTGAA GAAGAAACTA GAAGAGGGAA TGGTGTTCAC AGAATATGAG CAAATTCCAA
2821AGAAAAAGGC GAATGGCATT TTCAGCACAG CAGCTCTGCC AGAAAACGCC GAGCGCAGCC
2881GAATCCGTGA AGTTGTCCCC TATGAGGAGA ATCGAGTAGA GCTGATACCA ACCAAAGAAA
2941ATAACACAGG ATACATTAAT GCCTCCCACA TCAAGGTGGT GGTTGGCGGG GCAGAATGGC
3001ACTACATAGC CACCCAGGGG CCCCTGCCAC ACACGTGCCA CGACTTCTGG CAGATGGTGT
3061GGGAGCAGGG AGTGAATGTG ATTGCCATGG TCACTGCAGA GGAGGAGGGT GGACGAACCA
3121AAAGCCACCG ATACTGGCCC AAACTAGGTT CAAAGCACAG CTCAGCCACC TATGGCAAGT
3181TCAAGGTCAC CACGAAGTTT CGAACGGATT CTGTTTGCTA TGCAACCACG GGCTTGAAGG
3241TCAAGCACCT TTTGTCTGGG CAAGAAAGGA CGGTGTGGCA TTTACAATAT ACTGACTGGC
3301CAGATCACGG CTGTCCAGAG GATGTCCAAG GATTTTTATC CTACTTGGAG GAGATCCAGT
3361CGGTCCGTCG CCATACCAAC AGCATGCTGG AAGGCACCAA GAACCGGCAC CCGCCCATCG
3421TGGTCCACTG TAGTGCTGGG GTGGGAAGGA CCGGCGTGCT CATTCTTTCT GAGCTGATGA
3481TCTACTGCTT GGAACATAAC GAAAAGGTGG AAGTGCCCAT GATGCTGAGG CTCCTCAGGG
3541AGCAGAGGAT GTTCATGATC CAGACTATCG CTCAGTACAA GTTTGTCTAC CAAGTCCTCA
3601TCCAGTTCCT CCAAAACTCC AGACTCATTT TGCCAACTTT CTTGTACAAA GTTGGcatta
3661taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)