Transcript: Human NM_005401.5

Homo sapiens protein tyrosine phosphatase non-receptor type 14 (PTPN14), mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
PTPN14 (5784)
Length:
13360
CDS:
575..4138

Additional Resources:

NCBI RefSeq record:
NM_005401.5
NBCI Gene record:
PTPN14 (5784)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005401.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000356151 AGGCCACAAGATATCAGTATT pLKO_005 909 CDS 100% 13.200 18.480 N PTPN14 n/a
2 TRCN0000226414 TGCGAGAGACGCACTACTTTG pLKO_005 741 CDS 100% 10.800 15.120 N PTPN14 n/a
3 TRCN0000006891 CGGGAAGAGAATCGAGTTGAT pLKO.1 3215 CDS 100% 4.950 6.930 N PTPN14 n/a
4 TRCN0000006890 GCGGTAATATACAGGTGGAAT pLKO.1 1319 CDS 100% 4.950 6.930 N PTPN14 n/a
5 TRCN0000356150 CATCTGGACAAATTCGCTAAT pLKO_005 827 CDS 100% 10.800 8.640 N PTPN14 n/a
6 TRCN0000006892 CGCTCAGTACAAGTTTGTCTA pLKO.1 4075 CDS 100% 4.950 3.960 N PTPN14 n/a
7 TRCN0000226415 TTGGAAGACAAGCGGTAATAT pLKO_005 1308 CDS 100% 15.000 10.500 N PTPN14 n/a
8 TRCN0000218796 GATCTACTGCTTGGAACATAA pLKO_005 3985 CDS 100% 13.200 9.240 N PTPN14 n/a
9 TRCN0000006893 CCTCAGAGAGTATGTGCTATT pLKO.1 1057 CDS 100% 10.800 7.560 N PTPN14 n/a
10 TRCN0000226416 CTATCGCTCAGTACAAGTTTG pLKO_005 4071 CDS 100% 10.800 7.560 N PTPN14 n/a
11 TRCN0000367553 GATGTGCTTGAAGGGCGATTA pLKO_005 947 CDS 100% 10.800 7.560 N PTPN14 n/a
12 TRCN0000006889 AGAGTCACCTCCAGACAACAT pLKO.1 4190 3UTR 100% 4.950 3.465 N PTPN14 n/a
13 TRCN0000226417 GTCACCTCCAGACAACATCTG pLKO_005 4193 3UTR 100% 4.050 2.835 N PTPN14 n/a
14 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 5821 3UTR 100% 4.950 2.475 Y CFLAR n/a
15 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 5821 3UTR 100% 4.950 2.475 Y C19orf31 n/a
16 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 10952 3UTR 100% 5.625 2.813 Y KLHL30 n/a
17 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 5819 3UTR 100% 4.950 2.475 Y ERN2 n/a
18 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 5819 3UTR 100% 4.950 2.475 Y P3H4 n/a
19 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 5819 3UTR 100% 4.950 2.475 Y P3H4 n/a
20 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 10952 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005401.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06815 pDONR223 100% 99.9% 100% None 978A>G;3252A>G n/a
2 ccsbBroad304_06815 pLX_304 0% 99.9% 100% V5 978A>G;3252A>G n/a
3 TRCN0000479328 AGCCGCAAATCCCAATTCCCGTCC pLX_317 13.1% 99.9% 100% V5 978A>G;3252A>G n/a
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