Construct: ORF ccsbBroadEn_06816

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018176.1_s300c1, BRDN0000386636
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTPRA (5786)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5786 PTPRA protein tyrosine phosphatas... NM_080840.2 99.9% 100% 882C>T
2 human 5786 PTPRA protein tyrosine phosphatas... NM_080841.2 99.9% 100% 882C>T
3 human 5786 PTPRA protein tyrosine phosphatas... NM_002836.3 98.8% 98.8% 414_440del;909C>T
4 mouse 19262 Ptpra protein tyrosine phosphatas... NM_001163688.1 90.6% 95.9% (many diffs)
5 mouse 19262 Ptpra protein tyrosine phosphatas... XM_006498989.3 89.7% 94.8% (many diffs)
6 mouse 19262 Ptpra protein tyrosine phosphatas... NM_008980.2 86.7% 91.6% (many diffs)
7 mouse 19262 Ptpra protein tyrosine phosphatas... XM_006498990.3 80.7% 84.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2445
ORF length:
2379
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TTCCTGGTTC ATTCTTGTTC TGCTCGGCAG TGGTCTGATA TGTGTCAGTG
121CCAACAATGC TACCACAGTT GCACCTTCTG TAGGAATTAC AAGATTAATT AACTCATCAA
181CGGCAGAACC AGTTAAAGAA GAGGCCAAAA CTTCAAATCC AACTTCTTCA CTAACTTCTC
241TTTCTGTGGC ACCAACATTC AGCCCAAATA TAACTCTGGG ACCCACCTAT TTAACCACTG
301TCAATTCTTC AGACTCTGAC AATGGGACCA CAAGAACAGC AAGCACCAAT TCTATAGGCA
361TTACAATTTC ACCAAATGGA ACGTGGCTTC CAGATAACCA GTTCACGGAT GCCAGAACAG
421AACCCTGGGA GGGGAATTCC AGCACCGCAG CAACCACTCC AGAAACTTTC CCTCCTTCAG
481ATGAGACACC AATTATTGCG GTGATGGTGG CCCTGTCCTC TCTGCTAGTG ATCGTGTTTA
541TTATCATAGT TTTGTACATG TTAAGGTTTA AGAAATACAA GCAAGCTGGG AGCCATTCCA
601ATTCTTTCCG CTTATCCAAC GGCCGCACTG AGGATGTGGA GCCCCAGAGT GTGCCACTTC
661TGGCCAGATC CCCAAGCACC AACAGGAAAT ACCCACCCCT GCCCGTGGAC AAGCTGGAAG
721AGGAAATTAA CCGGAGAATG GCAGACGACA ATAAGCTCTT CAGGGAGGAA TTCAACGCTC
781TCCCTGCATG TCCTATCCAG GCCACCTGTG AGGCTGCTTC CAAGGAGGAA AACAAGGAAA
841AAAATCGATA TGTAAACATC TTGCCTTATG ACCACTCTAG AGTCCACCTG ACACCGGTTG
901AAGGGGTTCC AGATTCTGAT TACATCAATG CTTCATTCAT CAACGGTTAC CAAGAAAAGA
961ACAAATTCAT TGCTGCACAA GGACCAAAAG AAGAAACGGT GAATGATTTC TGGCGGATGA
1021TCTGGGAACA AAACACAGCC ACCATCGTCA TGGTTACCAA CCTGAAGGAG AGAAAGGAGT
1081GCAAGTGCGC CCAGTACTGG CCAGACCAAG GCTGCTGGAC CTATGGGAAT ATTCGGGTGT
1141CTGTAGAGGA TGTGACTGTC CTGGTGGACT ACACAGTACG GAAGTTCTGC ATCCAGCAGG
1201TGGGCGACAT GACCAACAGA AAGCCACAGC GCCTCATCAC TCAGTTCCAC TTTACCAGCT
1261GGCCAGACTT TGGGGTGCCT TTTACCCCGA TCGGCATGCT CAAGTTCCTC AAGAAGGTGA
1321AGGCCTGTAA CCCTCAGTAT GCAGGGGCCA TCGTGGTCCA CTGCAGTGCA GGTGTAGGGC
1381GTACAGGTAC CTTTGTCGTC ATTGATGCCA TGCTGGACAT GATGCATACA GAACGGAAGG
1441TGGACGTGTA TGGCTTTGTG AGCCGGATCC GGGCACAGCG CTGCCAGATG GTGCAAACCG
1501ATATGCAGTA TGTCTTCATA TACCAAGCCC TTCTGGAGCA TTATCTCTAT GGAGATACAG
1561AACTGGAAGT GACCTCTCTA GAAACCCACC TGCAGAAAAT TTACAACAAA ATCCCAGGGA
1621CCAGCAACAA TGGATTAGAG GAGGAGTTTA AGAAGTTAAC ATCAATCAAA ATCCAGAATG
1681ACAAGATGCG GACTGGAAAC CTTCCAGCCA ACATGAAGAA GAACCGTGTT TTACAGATCA
1741TTCCATATGA ATTCAACAGA GTGATCATTC CAGTTAAGCG GGGCGAAGAG AATACAGACT
1801ATGTGAACGC ATCCTTTATT GATGGCTACC GGCAGAAGGA CTCCTATATC GCCAGCCAGG
1861GCCCTCTTCT CCACACAATT GAGGACTTCT GGCGAATGAT CTGGGAGTGG AAATCCTGCT
1921CTATCGTGAT GCTAACAGAA CTGGAGGAGA GAGGCCAGGA GAAGTGTGCC CAGTACTGGC
1981CATCTGATGG ACTGGTGTCC TATGGAGATA TTACAGTGGA ACTGAAGAAG GAGGAGGAAT
2041GTGAGAGCTA CACCGTCCGA GACCTCCTGG TCACCAACAC CAGGGAGAAT AAGAGCCGGC
2101AGATCCGGCA GTTCCACTTC CATGGCTGGC CTGAAGTGGG CATCCCCAGT GACGGAAAGG
2161GCATGATCAG CATCATCGCC GCCGTGCAGA AGCAGCAGCA GCAGTCAGGG AACCACCCCA
2221TCACCGTGCA CTGCAGCGCC GGGGCAGGAA GGACGGGGAC CTTCTGTGCC CTGAGCACCG
2281TCCTGGAGCG TGTGAAAGCA GAGGGGATTT TGGATGTCTT CCAGACTGTC AAGAGCCTGC
2341GGCTACAGAG GCCACACATG GTCCAGACAC TGGAACAGTA TGAGTTCTGC TACAAGGTGG
2401TGCAGGAGTA TATTGATGCA TTCTCAGATT ATGCCAACTT CAAGTACCCA ACTTTCTTGT
2461ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)