Construct: ORF ccsbBroadEn_06904

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013246.1_s300c1, BRDN0000391712
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RXRB (6257)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6257 RXRB retinoid X receptor beta NM_021976.5 99.9% 100% 1152C>T
2 human 6257 RXRB retinoid X receptor beta NM_001270401.2 99.1% 99.2% 1152C>T;1256_1267del
3 human 6257 RXRB retinoid X receptor beta XM_005249278.3 81.3% 71.8% (many diffs)
4 human 6257 RXRB retinoid X receptor beta XM_011514796.3 77.4% 77.4% 234_235ins351;801C>T;905_916del
5 human 6257 RXRB retinoid X receptor beta XM_017011176.1 76.2% 76.3% 0_1ins369;783C>T;887_898del
6 human 6257 RXRB retinoid X receptor beta NM_001291989.1 63.6% 63.3% (many diffs)
7 mouse 20182 Rxrb retinoid X receptor beta NM_011306.4 89.4% 94.7% (many diffs)
8 mouse 20182 Rxrb retinoid X receptor beta NM_001205214.1 88.7% 94% (many diffs)
9 mouse 20182 Rxrb retinoid X receptor beta NM_001205216.1 70.7% 75.9% (many diffs)
10 mouse 20182 Rxrb retinoid X receptor beta NM_001205215.1 70.2% 75.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1665
ORF length:
1599
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC TTGGGCCGCT CGCCCGCCCT TCCTCCCTCA GCGGCATGCC GCAGGGCAGT
121GTGGGCCGGT GGGGGTGCGA AAAGAAATGC ATTGTGGGGT CGCGTCCCGG TGGCGGCGGC
181GACGGCCCTG GCTGGATCCC GCAGCGGCGG CGgcggcggC GGTGGCAGGC GGAGAACAAC
241AAACCCCGGA GCCGGAGCCA GGGGAGGCTG GACGGGACGG GATGGGCGAC AGCGGGCGGG
301ACTCCCGAAG CCCAGACAGC TCCTCCCCAA ATCCCCTTCC CCAGGGAGTC CCTCCCCCTT
361CTCCTCCTGG GCCACCCCTA CCCCCTTCAA CAGCTCCATC CCTTGGAGGC TCTGGGGCCC
421CACCCCCACC CCCGATGCCA CCACCCCCAC TGGGCTCTCC CTTTCCAGTC ATCAGTTCTT
481CCATGGGGTC CCCTGGTCTG CCCCCTCCAG CTCCCCCAGG ATTCTCCGGG CCTGTCAGCA
541GCCCCCAGAT TAACTCAACA GTGTCACTCC CTGGGGGTGG GTCTGGCCCC CCTGAAGATG
601TGAAGCCACC AGTCTTAGGG GTCCGGGGCC TGCACTGTCC ACCCCCTCCA GGTGGCCCTG
661GGGCTGGCAA ACGGCTATGT GCAATCTGCG GGGACAGAAG CTCAGGCAAA CACTACGGGG
721TTTACAGCTG TGAGGGTTGC AAGGGCTTCT TCAAACGCAC CATCCGCAAA GACCTTACAT
781ACTCTTGCCG GGACAACAAA GACTGCACAG TGGACAAGCG CCAGCGGAAC CGCTGTCAGT
841ACTGCCGCTA TCAGAAGTGC CTGGCCACTG GCATGAAGAG GGAGGCGGTA CAGGAGGAGC
901GTCAGCGGGG AAAGGACAAG GATGGGGATG GGGAGGGGGC TGGGGGAGCC CCCGAGGAGA
961TGCCTGTGGA CAGGATCCTG GAGGCAGAGC TTGCTGTGGA ACAGAAGAGT GACCAGGGCG
1021TTGAGGGTCC TGGGGGAACC GGGGGTAGCG GCAGCAGCCC AAATGACCCT GTGACTAACA
1081TCTGTCAGGC AGCTGACAAA CAGCTATTCA CGCTTGTTGA GTGGGCGAAG AGGATCCCAC
1141ACTTTTCCTC CTTGCCTCTG GATGATCAGG TCATATTGCT GCGGGCAGGC TGGAATGAAC
1201TCCTCATTGC CTCCTTTTCA CACCGATCCA TTGATGTTCG AGATGGCATC CTCCTTGCCA
1261CAGGTCTTCA CGTGCACCGC AACTCAGCCC ATTCAGCAGG AGTAGGAGCC ATCTTTGATC
1321GGGTGCTGAC AGAGCTAGTG TCCAAAATGC GTGACATGAG GATGGACAAG ACAGAGCTTG
1381GCTGCCTGAG GGCAATCATT CTGTTTAATC CAGATGCCAA GGGCCTCTCC AACCCTAGTG
1441AGGTGGAGGT CCTGCGGGAG AAAGTGTATG CATCACTGGA GACCTACTGC AAACAGAAGT
1501ACCCTGAGCA GCAGGGACGG TTTGCCAAGC TGCTGCTACG TCTTCCTGCC CTCCGGTCCA
1561TTGGCCTTAA GTGTCTAGAG CATCTGTTTT TCTTCAAGCT CATTGGTGAC ACCCCCATCG
1621ACACCTTCCT CATGGAGATG CTTGAGGCTC CCCATCAACT GGCCTGCCCA ACTTTCTTGT
1681ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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