Construct: ORF ccsbBroadEn_06976

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004255.1_s300c1, BRDN0000391144
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SMARCE1 (6605)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6605 SMARCE1 SWI/SNF related, matrix ass... NM_003079.5 99.9% 99.7% 136G>A
2 mouse 57376 Smarce1 SWI/SNF related, matrix ass... NM_020618.4 92.3% 97% (many diffs)
3 mouse 57376 Smarce1 SWI/SNF related, matrix ass... XM_006533827.3 83.8% 88.8% (many diffs)
4 mouse 57376 Smarce1 SWI/SNF related, matrix ass... XM_006533828.2 75.7% 80.2% (many diffs)
5 mouse 57376 Smarce1 SWI/SNF related, matrix ass... XM_011249158.1 75.7% 80.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1299
ORF length:
1233
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC AAAAAGACCA TCTTATGCCC CACCTCCCAC CCCAGCTCCT GCAACACAAA
121TGCCCAGCAC ACCAGGGTTT GTGGGATACA ATCCATACAG TCATCTCGCC TACAACAACT
181ACAGGCTGGG AGGGAACCCG AGCACCAACA GCCGGGTCAC GGCATCCTCT GGTATCACGA
241TTCCAAAACC CCCAAAGCCA CCAGATAAGC CGCTGATGCC CTACATGAGG TACAGCAGAA
301AGGTCTGGGA CCAAGTAAAG GCTTCCAACC CTGACCTAAA GTTGTGGGAG ATTGGCAAGA
361TTATTGGTGG CATGTGGCGA GATCTCACTG ATGAAGAAAA ACAAGAATAT TTAAACGAAT
421ACGAAGCAGA AAAGATAGAG TACAATGAAT CTATGAAGGC CTATCATAAT TCCCCCGCGT
481ACCTTGCTTA CATAAATGCA AAAAGTCGTG CAGAAGCTGC TTTAGAGGAA GAAAGTCGAC
541AGAGACAATC TCGCATGGAG AAAGGAGAAC CGTACATGAG CATTCAGCCT GCTGAAGATC
601CAGATGATTA TGATGATGGC TTTTCAATGA AGCATACAGC CACCGCCCGT TTCCAGAGAA
661ACCACCGCCT CATCAGTGAA ATTCTTAGTG AGAGTGTGGT GCCAGACGTT CGGTCAGTTG
721TCACAACAGC TAGAATGCAG GTCCTCAAAC GGCAGGTCCA GTCCTTAATG GTTCATCAGC
781GAAAACTAGA AGCTGAACTT CTTCAAATAG AGGAACGACA CCAGGAGAAG AAGAGGAAAT
841TCCTGGAAAG CACAGATTCA TTTAACAATG AACTTAAAAG GTTGTGCGGT CTGAAAGTAG
901AAGTGGATAT GGAGAAAATT GCAGCTGAGA TTGCACAGGC AGAGGAACAG GCCCGCAAAA
961GGCAGGAGGA AAGGGAGAAG GAGGCCGCAG AGCAAGCTGA GCGCAGTCAG AGCAGCATCG
1021TTCCTGAGGA AGAACAAGCA GCTAACAAAG GCGAGGAGAA GAAAGACGAC GAGAACATTC
1081CGATGGAGAC AGAGGAGACA CACCTTGAAG AAACAACAGA GAGCCAACAG AATGGTGAAG
1141AAGGCACGTC TACTCCTGAG GACAAGGAGA GTGGGCAGGA GGGGGTCGAC AGTATGGCAG
1201AGGAAGGAAC CAGTGATAGT AACACTGGCT CGGAGAGCAA CAGTGCAACA GTGGAGGAGC
1261CACCAACAGA TCCCATACCA GAAGATGAGA AAAAAGAATA CCCAACTTTC TTGTACAAAG
1321Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)