Construct: ORF ccsbBroadEn_07017
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006109.1_s300c1, BRDN0000456563
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SUOX (6821)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6821 | SUOX | sulfite oxidase | NM_000456.3 | 99.9% | 100% | 1281G>C |
| 2 | human | 6821 | SUOX | sulfite oxidase | NM_001032386.2 | 99.9% | 100% | 1281G>C |
| 3 | human | 6821 | SUOX | sulfite oxidase | NM_001032387.2 | 99.9% | 100% | 1281G>C |
| 4 | human | 6821 | SUOX | sulfite oxidase | XM_017019907.2 | 99.9% | 100% | 1281G>C |
| 5 | human | 6821 | SUOX | sulfite oxidase | XM_017019908.1 | 99.9% | 100% | 1281G>C |
| 6 | human | 6821 | SUOX | sulfite oxidase | XM_017019905.2 | 98.6% | 98.7% | 1_21del;1302G>C |
| 7 | human | 6821 | SUOX | sulfite oxidase | XM_017019906.1 | 98.6% | 98.7% | 1_21del;1302G>C |
| 8 | human | 6821 | SUOX | sulfite oxidase | XM_024449167.1 | 98.6% | 98.7% | 1_21del;1302G>C |
| 9 | mouse | 211389 | Suox | sulfite oxidase | NM_173733.3 | 85.4% | 85.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1704
- ORF length:
- 1635
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTGCTGCTG CACAGAGCTG TGGTCCTCAG GCTCCAACAG GCCTGCAGAC 121 TCAAGTCAAT CCCCTCAAGG ATCTGCATTC AGGCCTGCTC CACAAATGAT TCATTTCAGC 181 CCCAGCGCCC CAGCCTCACC TTCTCTGGTG ATAACTCCAG CACCCAGGGA TGGAGAGTCA 241 TGGGGACCCT ATTAGGTCTC GGTGCAGTGT TGGCCTATCA GGACCATCGG TGTAGGGCTG 301 CTCAGGAGTC AACACACATA TACACTAAGG AGGAAGTGAG TTCCCACACC AGCCCTGAGA 361 CTGGGATCTG GGTGACTCTG GGCTCTGAGG TCTTTGATGT CACAGAATTT GTGGACCTAC 421 ATCCAGGGGG GCCTTCAAAG CTGATGCTAG CAGCTGGGGG TCCCCTAGAG CCCTTCTGGG 481 CCCTCTATGC TGTTCACAAC CAGTCCCATG TGCGTGAGTT ACTGGCTCAG TACAAGATTG 541 GGGAGCTGAA TCCTGAAGAC AAGGTAGCCC CCACCGTGGA GACCTCTGAC CCTTATGCTG 601 ATGATCCTGT ACGTCACCCA GCCCTGAAGG TCAACAGCCA GCGGCCCTTT AATGCAGAGC 661 CTCCCCCTGA GCTGCTGACA GAAAACTACA TCACACCCAA CCCTATCTTC TTCACCCGGA 721 ACCATCTGCC TGTACCTAAC CTGGATCCAG ACACCTATCG CTTACACGTA GTAGGAGCAC 781 CTGGGGGTCA GTCACTGTCT CTTTCCCTGG ATGACTTGCA CAACTTTCCC AGGTACGAGA 841 TCACAGTCAC TCTGCAGTGT GCCGGCAACC GACGCTCTGA GATGACTCAG GTCAAAGAAG 901 TAAAAGGTCT GGAGTGGAGA ACAGGAGCCA TCAGCACTGC ACGCTGGGCT GGGGCACGGC 961 TCTGTGATGT GTTAGCCCAG GCTGGCCACC AACTCTGTGA AACTGAGGCC CACGTCTGCT 1021 TTGAGGGACT GGACTCAGAC CCTACTGGGA CTGCCTATGG AGCATCCATC CCTCTGGCTC 1081 GGGCCATGGA CCCTGAAGCT GAGGTCCTGC TGGCATATGA GATGAATGGG CAGCCTCTGC 1141 CACGTGACCA CGGCTTCCCT GTGCGTGTGG TGGTTCCTGG AGTGGTGGGT GCCCGCCATG 1201 TCAAATGGCT GGGCAGAGTG AGTGTGCAGC CAGAGGAAAG TTACAGCCAC TGGCAACGGC 1261 GGGATTACAA AGGCTTCTCT CCATCTGTGG ACTGGGAGAC TGTAGATTTT GACTCTGCTC 1321 CATCCATTCA GGAACTTCCT GTCCAGTCCG CCATCACAGA GCCCCGGGAT GGAGAGACTG 1381 TAGAATCAGG GGAGGTGACC ATCAAGGGCT ATGCATGGAG TGGTGGTGGC AGGGCTGTGA 1441 TCCGGGTGGA TGTGTCTCTG GATGGGGGCC TAACCTGGCA GGTGGCTAAG CTGGATGGAG 1501 AGGAACAGCG CCCCAGGAAG GCCTGGGCAT GGCGTCTGTG GCAGTTGAAA GCCCCTGTGC 1561 CAGCTGGACA AAAGGAACTG AACATTGTTT GTAAGGCTGT GGATGATGGT TACAATGTGC 1621 AGCCAGACAC CGTGGCCCCA ATCTGGAACC TGCGAGGTGT TCTCAGCAAT GCCTGGCATC 1681 GTGTCCATGT CTATGTCTCC CCATTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa 1741 agcattgctt atcaatttgt tgcaacgaac