Construct: ORF ccsbBroadEn_07041

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014247.1_s300c1, BRDN0000385479
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TCOF1 (6949)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6949 TCOF1 treacle ribosome biogenesis... NM_001008657.3 99.9% 99.8% 919G>A
2 human 6949 TCOF1 treacle ribosome biogenesis... XM_005268508.4 96.2% 95.7% 919G>A;2855_2965del
3 human 6949 TCOF1 treacle ribosome biogenesis... XM_005268509.4 96% 95.9% (many diffs)
4 human 6949 TCOF1 treacle ribosome biogenesis... XM_017009795.2 91.9% 91.8% 637_638ins231;688G>A
5 human 6949 TCOF1 treacle ribosome biogenesis... XR_427779.2 80.2% (many diffs)
6 human 6949 TCOF1 treacle ribosome biogenesis... XR_427780.3 65.9% (many diffs)
7 human 6949 TCOF1 treacle ribosome biogenesis... NM_001195141.2 65.8% 65.7% (many diffs)
8 human 6949 TCOF1 treacle ribosome biogenesis... NM_001135244.2 65.7% 65.7% (many diffs)
9 human 6949 TCOF1 treacle ribosome biogenesis... XR_427778.3 64.8% (many diffs)
10 human 6949 TCOF1 treacle ribosome biogenesis... XM_017009792.2 64.2% 64% (many diffs)
11 human 6949 TCOF1 treacle ribosome biogenesis... XM_005268506.4 64.1% 64% (many diffs)
12 human 6949 TCOF1 treacle ribosome biogenesis... NM_001135243.1 64.1% 64.1% (many diffs)
13 human 6949 TCOF1 treacle ribosome biogenesis... NM_001371623.1 64% 64% (many diffs)
14 human 6949 TCOF1 treacle ribosome biogenesis... XM_005268503.4 62.6% 62.5% (many diffs)
15 human 6949 TCOF1 treacle ribosome biogenesis... XM_005268504.4 62.6% 62.4% (many diffs)
16 human 6949 TCOF1 treacle ribosome biogenesis... XM_005268502.4 62.5% 62.4% (many diffs)
17 human 6949 TCOF1 treacle ribosome biogenesis... XM_017009794.2 61.6% 61.6% (many diffs)
18 human 6949 TCOF1 treacle ribosome biogenesis... XM_017009793.2 60% 60% (many diffs)
19 human 6949 TCOF1 treacle ribosome biogenesis... NM_000356.4 58.9% 58.9% (many diffs)
20 human 6949 TCOF1 treacle ribosome biogenesis... NM_001135245.2 58.9% 58.8% (many diffs)
21 human 6949 TCOF1 treacle ribosome biogenesis... XM_011537678.3 58.6% 58.5% (many diffs)
22 human 6949 TCOF1 treacle ribosome biogenesis... XM_005268507.4 57.5% 57.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2940
ORF length:
2874
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CGAGGCCAGG AAGCGGCGGG AGCTACTTCC CCTGATCTAC CACCATCTGC
121TGCGGGCTGG CTATGTGCGT GCGGCGCGGG AAGTGAAGGA GCAGAGCGGC CAGAAGTGTT
181TCCTGGCTCA GCCCGTAACC CTTCTGGACA TCTATACACA CTGGCAACAA ACCTCAGAGC
241TTGGTCGGAA GCGGAAGGCA GAGGAAGATG CGGCACTGCA AGCTAAGAAA ACCCGTGTGT
301CAGACCCCAT CAGCACCTCG GAGAGCTCGG AAGAGGAGGA AGAAGCAGAA GCCGAAACCG
361CCAAAGCCAC CCCAAGACTA GCATCTACCA ACTCCTCAGT CCTGGGGGCG GACTTGCCAT
421CAAGCATGAA AGAAAAAGCC AAGGCAGAGA CAGAGAAAGC TGGCAAGACT GGGAATTCCA
481TGCCACACCC TGCCACTGGG AAGACGGTGG CCAACCTTCT TTCTGGGAAG TCTCCCAGGA
541AGTCAGCAGA GCCCTCAGCA AATACTACGT TGGTCTCAGA AACTGAGGAG GAGGGCAGCG
601TCCCGGCCTT TGGAGCTGCT GCCAAGCCTG GGATGGTGTC AGCGGGCCAG GCCGACAGCT
661CCAGCGAGGA CACCTCCAGC TCCAGTGATG AGACAGACGT GGAGGGGAAA CCCTCAGTAA
721AACCAGCCCA GGTCAAAGCC TCATCAGTTT CTACTAAGGA GTCTCCAGCA AGAAAGGCGG
781CCCCAGCCCC TGGGAAGGTG GGGGATGTGA CACCCCAGGT CAAAGGAGGG GCCCTGCCCC
841CAGCCAAGAG GGCCAAGAAG CCAGAAGAGG AGTCAGAGAG TAGTGAGGAG GGATCTGAAA
901GTGAGGAGGA GGCCCCTGCA GGGACACGAA GCCAGGTAAA GGCCTCTGAA AAAATTCTCC
961AGGTCAGAGC TGCCTCAGCC CCTACCAAGG GGACCCCTGG GAAAGGGGCT ACCCCAGCAC
1021CCCCTGGGAA GGCAGGGGCT GTAGCCTCCC AGACCAAGGC AGGGAAGCCA GAGGAGGACT
1081CAGAGAGCAG CAGCGAGGAG TCATCTGACA GTGAGGAGGA GACGCCAGCT GCCAAGGCCC
1141TGCTTCAGGC GAAGGCCTCA GGAAAAACCT CTCAGGTCGG AGCTGCCTCA GCCCCTGCCA
1201AGGAGTCCCC CAGGAAAGGA GCTGCCCCAG CGCCCCCTGG GAAGACAGGG CCTGCAGTTG
1261CCAAGGCCCA GGCGGGGAAG CGGGAGGAGG ACTCGCAGAG CAGCAGCGAG GAATCGGACA
1321GTGAGGAGGA GGCGCCTGCT CAGGCGAAGC CTTCAGGGAA GGCCCCCCAG GTCAGAGCCG
1381CCTCGGCCCC TGCCAAGGAG TCCCCCAGGA AAGGGGCTGC CCCAGCACCT CCTAGGAAAA
1441CAGGGCCTGC AGCCGCCCAG GTCCAGGTGG GGAAGCAGGA GGAGGACTCA AGAAGCAGCA
1501GCGAGGAGTC AGACAGTGAC AGAGAGGCAC TGGCAGCCAT GAATGCAGCT CAGGTGAAGC
1561CCTTGGGGAA AAGCCCCCAG GTGAAACCTG CCTCTACCAT GGGCATGGGG CCCTTGGGGA
1621AAGGCGCCGG CCCAGTGCCA CCCGGGAAGG TGGGGCCTGC AACCCCCTCA GCCCAGGTGG
1681GGAAGTGGGA GGAGGACTCA GAGAGCAGTA GTGAGGAGTC ATCAGACAGC AGTGATGGAG
1741AGGTGCCCAC AGCTGTGGCC CCGGCTCAGG AAAAGTCCTT GGGGAACATC CTCCAGGCCA
1801AACCCACCTC CAGTCCTGCC AAGGGGCCCC CTCAGAAGGC AGGGCCTGTA GCCGTCCAGG
1861TCAAGGCTGA AAAGCCCATG GACAACTCGG AGAGCAGCGA GGAGTCATCG GACAGTGCGG
1921ACAGTGAGGA GGCACCAGCA GCCATGACTG CAGCTCAGGC AAAACCAGCT CTGAAAATTC
1981CTCAGACCAA GGCCTGCCCA AAGAAAACCA ATACCACTGC ATCTGCCAAG GTCGCCCCTG
2041TGCGAGTGGG CACCCAAGCC CCCCGGAAAG CAGGAACTGC GACTTCTCCA GCAGGCTCAT
2101CCCCAGCTGT GGCTGGGGGC ACCCAGAGAC CAGCAGAGGA TTCTTCAAGC AGTGAGGAAT
2161CAGATAGTGA GGAAGAGAAG ACAGGTCTTG CAGTAACCGT GGGACAGGCA AAGTCTGTGG
2221GGAAAGGCCT CCAGGTGAAA GCAGCCTCAG TGCCTGTCAA GGGGTCCTTG GGGCAAGGGA
2281CTGCTCCAGT ACTCCCTGGG AAGACGGGGC CTACAGTCAC CCAGGTGAAA GCTGAAAAGC
2341AGGAAGACTC TGAGAGCAGT GAGGAGGAAT CAGACAGTGA GGAAGCAGCT GCATCTCCAG
2401CACAGGTGAA AACCTCAGTA AAGAAAACCC AGGCCAAAGC CAACCCAGCT GCCGCCAGAG
2461CACCTTCAGC AAAAGGGACA ATTTCAGCCC CTGGAAAAGT TGTCACTGCA GCTGCTCAAG
2521CCAAGCAGAG GTCTCCATCC AAGGTGAAGC CACCAGTGAG AAACCCCCAG AACAGTACCG
2581TCTTGGCGAG GGGCCCAGCA TCTGTGCCAT CTGTGGGGAA GGCCGTGGCT ACAGCAGCTC
2641AGGCCCAGAC AGGGCCAGAG GAGGACTCAG GGAGCAGTGA GGAGGAGTCA GACAGTGAGG
2701AGGAGGCGGA GACGCTGGCT CAGGTGAAGC CTTCAGGGAA GACCCACCAG ATCAGAGCTG
2761CCTTGGCTCC TGCCAAGGAG TCCCCCAGGA AAGGGGCTGC CCCAACACCT CCTGGGAAGA
2821CAGGGCCTTC GGCTGCCCAG GCAGGGAAGC AGGATGACTC AGGGAGCAGC AGCGAGGAAT
2881CAGACAGTGA TGGGGAGGCA CCGGCAGCTG TGACCTCTGC CCAGGACCAG GAGTCTTCTT
2941GCCCAACTTT CTTGTACANA GTtggcatta taagaaagca ttgcttatca atttgttgca
3001acgaac

Download FASTA (ORF) (Full)

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