Construct: ORF ccsbBroadEn_07042
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011459.1_s300c1, BRDN0000387171
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TCP10 (6953)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 401285 | TCP10L2 | t-complex 10 like 2 | NM_001145121.2 | 98.6% | 97.4% | (many diffs) |
| 2 | human | 6953 | TCP10 | t-complex 10 | NR_163194.1 | 82.6% | (many diffs) | |
| 3 | human | 401285 | TCP10L2 | t-complex 10 like 2 | XM_017010859.2 | 79.1% | 71.4% | (many diffs) |
| 4 | human | 6953 | TCP10 | t-complex 10 | NR_163193.1 | 72% | (many diffs) | |
| 5 | human | 6953 | TCP10 | t-complex 10 | NR_163196.1 | 66.2% | (many diffs) | |
| 6 | human | 140290 | TCP10L | t-complex 10 like | NM_144659.7 | 54% | 46.7% | (many diffs) |
| 7 | human | 6953 | TCP10 | t-complex 10 | NR_163195.1 | 53.1% | (many diffs) | |
| 8 | human | 401285 | TCP10L2 | t-complex 10 like 2 | XR_001743415.1 | 40.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1125
- ORF length:
- 1059
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GGAGGGTCAG CTCGAGGCCG GGGAGCCCAA GGAGGGCACC CACCCAGAAG 121 ACCCGTGCCC GGGAGCTGGG GCTGCCATGG AGAAGACACC TGCAGCAGCC GAGGTCCCCA 181 GGGAGGACGG CAATGCCGAG GAGATGCCGT CATTACAGCA GCAGATCACC AGCCTCCACC 241 AAGAGCTCGG GAGACAGCAG TCGCTGTGGG CTGATATTCA CAGAAAACTC CAGAGTCATA 301 TGGATGCCTT GAGGAAGCAG AACCGGGAGC TCCGAGAAGA GCTGAGAGGC CTGCAGCGGC 361 AGCAGTGGGA AGCCGGGAAG AAACCCGCAG CGTCCCCACA CGCGGGGCGA GAATCACACA 421 CTCTGGCATT GGAACCTGCT TTTGGAAAAA TTTCACCTCT GTCAGCTGAT GAAGAGACAA 481 CACCCAAATA CGCTGGCCGC AAGAGTCAGA GTGCCACTCT CCTGGGACAA AGATGGTCAT 541 CTAACCACTT AGCTCCTCCA AAGCCAATGA GTTTAAAGAC AGAAAGAATT AACTCGGGGA 601 AAACACCACC ACAGGAAGAT AGAGAGAAAA GTCCTCCCGG GAGACGTCAA GACAGAAGTC 661 CAGCACCCAC TGGAAGGCCG ACTCCCGGTG CAGAAAGACG GGAGGTGTCT GAAGACGGAA 721 AGATTATGCA TCCATCTTCC CGAAGTCCGC AAAACTCCGG TGGCAGAAAA TCACCAGTGC 781 AGGCTTCCCA GGCCACCACG CTGCAGGAGC AGACGGCAGC AGCCAGAGGA GCTGACAGAA 841 GCTCATCAGT CTTAGGGAGT TCTGAAGGCG GATTTCTCAG CCGCGTTCAA GCTGACGAGT 901 TCGCCAGTTC TTCCCCAGAC AGTGCAGAGC GGCAGAATCT TCCTGTAAAC CCACCATCTT 961 CCCTGGAAAT AGCACAGGCC ATGGACACTA AGATGAAAAA GGAGGAAGTA CAGGAAGAAA 1021 AACGACATCC AAAGGGCAAG GCAGATGACT GCCGGCGGTC CGGTTTCCCG AGTGAATTTC 1081 CAGGAGCTCT GCACGCCGCT CCCTCCAGAC AGGACATGGG GCCCTGCCCA ACTTTCTTGT 1141 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c