Construct: ORF ccsbBroadEn_07088

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005407.1_s300c1, BRDN0000386224
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TP53 (7157)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7157 TP53 tumor protein p53 NM_000546.5 99.8% 99.4% 215C>G;832C>G
2 human 7157 TP53 tumor protein p53 NM_001126112.2 99.8% 99.4% 215C>G;832C>G
3 human 7157 TP53 tumor protein p53 NM_001126118.1 89.9% 89.5% 0_1ins117;98C>G;715C>G
4 human 7157 TP53 tumor protein p53 NM_001276760.2 89.9% 89.5% 0_1ins117;98C>G;715C>G
5 human 7157 TP53 tumor protein p53 NM_001276761.2 89.9% 89.5% 0_1ins117;98C>G;715C>G
6 human 7157 TP53 tumor protein p53 NM_001126113.2 85.9% 84.4% (many diffs)
7 human 7157 TP53 tumor protein p53 NM_001126114.2 84.5% 83.9% (many diffs)
8 human 7157 TP53 tumor protein p53 NM_001276695.2 76% 74.5% (many diffs)
9 human 7157 TP53 tumor protein p53 NM_001276696.2 74.7% 74% (many diffs)
10 human 7157 TP53 tumor protein p53 NM_001126115.1 66.3% 66.1% 0_1ins396;436C>G
11 human 7157 TP53 tumor protein p53 NM_001276697.2 59.4% 59.2% 0_1ins477;355C>G
12 human 7157 TP53 tumor protein p53 NM_001126117.1 52.6% 51.1% (many diffs)
13 human 7157 TP53 tumor protein p53 NM_001126116.1 51.3% 50.6% (many diffs)
14 human 7157 TP53 tumor protein p53 NM_001276699.2 45.7% 44.2% (many diffs)
15 human 7157 TP53 tumor protein p53 NM_001276698.2 44.5% 43.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1245
ORF length:
1179
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GGAGCCGCAG TCAGATCCTA GCGTCGAGCC CCCTCTGAGT CAGGAAACAT
121TTTCAGACCT ATGGAAACTA CTTCCTGAAA ACAACGTTCT GTCCCCCTTG CCGTCCCAAG
181CAATGGATGA TTTGATGCTG TCCCCGGACG ATATTGAACA ATGGTTCACT GAAGACCCAG
241GTCCAGATGA AGCTCCCAGA ATGCCAGAGG CTGCTCCCCG CGTGGCCCCT GCACCAGCAG
301CTCCTACACC GGCGGCCCCT GCACCAGCCC CCTCCTGGCC CCTGTCATCT TCTGTCCCTT
361CCCAGAAAAC CTACCAGGGC AGCTACGGTT TCCGTCTGGG CTTCTTGCAT TCTGGGACAG
421CCAAGTCTGT GACTTGCACG TACTCCCCTG CCCTCAACAA GATGTTTTGC CAACTGGCCA
481AGACCTGCCC TGTGCAGCTG TGGGTTGATT CCACACCCCC GCCCGGCACC CGCGTCCGCG
541CCATGGCCAT CTACAAGCAG TCACAGCACA TGACGGAGGT TGTGAGGCGC TGCCCCCACC
601ATGAGCGCTG CTCAGATAGC GATGGTCTGG CCCCTCCTCA GCATCTTATC CGAGTGGAAG
661GAAATTTGCG TGTGGAGTAT TTGGATGACA GAAACACTTT TCGACATAGT GTGGTGGTGC
721CCTATGAGCC GCCTGAGGTT GGCTCTGACT GTACCACCAT CCACTACAAC TACATGTGTA
781ACAGTTCCTG CATGGGCGGC ATGAACCGGA GGCCCATCCT CACCATCATC ACACTGGAAG
841ACTCCAGTGG TAATCTACTG GGACGGAACA GCTTTGAGGT GCGTGTTTGT GCCTGTGCTG
901GGAGAGACCG GCGCACAGAG GAAGAGAATC TCCGCAAGAA AGGGGAGCCT CACCACGAGC
961TGCCCCCAGG GAGCACTAAG CGAGCACTGC CCAACAACAC CAGCTCCTCT CCCCAGCCAA
1021AGAAGAAACC ACTGGATGGA GAATATTTCA CCCTTCAGAT CCGTGGGCGT GAGCGCTTCG
1081AGATGTTCCG AGAGCTGAAT GAGGCCTTGG AACTCAAGGA TGCCCAGGCT GGGAAGGAGC
1141CAGGGGGGAG CAGGGCTCAC TCCAGCCACC TGAAGTCCAA AAAGGGTCAG TCTACCTCCC
1201GCCATAAAAA ACTCATGTTC AAGACAGAAG GGCCTGACTC AGACTGCCCA ACTTTCTTGT
1261ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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