Construct: ORF ccsbBroadEn_07095
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018079.1_s300c1, BRDN0000397119
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TPP2 (7174)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7174 | TPP2 | tripeptidyl peptidase 2 | NM_003291.4 | 99.9% | 100% | 780T>C |
| 2 | human | 7174 | TPP2 | tripeptidyl peptidase 2 | NM_001330588.2 | 98.9% | 98.9% | 780T>C;2953_2991del |
| 3 | human | 7174 | TPP2 | tripeptidyl peptidase 2 | NM_001367947.1 | 96.7% | 96.6% | 780T>C;3333_3458del |
| 4 | human | 7174 | TPP2 | tripeptidyl peptidase 2 | XM_005254070.2 | 95.7% | 95.7% | 780T>C;2953_2991del;3372_3497del |
| 5 | human | 7174 | TPP2 | tripeptidyl peptidase 2 | XR_243046.2 | 79.4% | (many diffs) | |
| 6 | human | 7174 | TPP2 | tripeptidyl peptidase 2 | XR_001749654.2 | 77.4% | (many diffs) | |
| 7 | human | 7174 | TPP2 | tripeptidyl peptidase 2 | NR_160411.1 | 68.6% | (many diffs) | |
| 8 | mouse | 22019 | Tpp2 | tripeptidyl peptidase II | NM_001310540.1 | 90.4% | 96.3% | (many diffs) |
| 9 | mouse | 22019 | Tpp2 | tripeptidyl peptidase II | NM_009418.3 | 89.4% | 95.3% | (many diffs) |
| 10 | mouse | 22019 | Tpp2 | tripeptidyl peptidase II | XR_001784011.1 | 70.7% | (many diffs) | |
| 11 | mouse | 22019 | Tpp2 | tripeptidyl peptidase II | XR_373249.3 | 70.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3813
- ORF length:
- 3747
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CACCGCTGCG ACTGAGGAGC CCTTCCCTTT TCACGGTCTC CTGCCGAAGA 121 AGGAGACCGG AGCCGCCTCC TTCCTCTGCC GCTACCCGGA GTATGATGGG CGGGGGGTGC 181 TCATCGCAGT CCTGGACACG GGGGTCGACC CGGGGGCTCC GGGCATGCAG GTTACAACTG 241 ATGGAAAACC AAAAATCGTT GATATCATTG ATACAACAGG AAGTGGCGAT GTGAATACTG 301 CTACAGAAGT AGAGCCAAAG GATGGTGAGA TTGTTGGCCT TTCAGGAAGA GTGCTTAAGA 361 TTCCTGCAAG CTGGACAAAT CCCTCAGGCA AATATCATAT TGGCATAAAA AATGGCTATG 421 ACTTCTATCC TAAGGCACTC AAGGAAAGGA TACAGAAAGA ACGGAAGGAA AAAATCTGGG 481 ACCCTGTTCA CAGAGTGGCC CTTGCAGAAG CCTGTAGAAA ACAGGAAGAA TTTGATGTTG 541 CCAACAACGG CTCTTCTCAA GCAAATAAAC TAATCAAGGA GGAACTTCAA AGTCAAGTGG 601 AATTGCTAAA TTCTTTTGAG AAGAAATACA GCGATCCTGG CCCTGTATAT GACTGCTTGG 661 TATGGCATGA TGGCGAAGTC TGGAGAGCCT GCATTGATTC TAATGAAGAT GGGGACTTGA 721 GTAAATCTAC CGTGTTGAGA AACTACAAAG AAGCCCAAGA ATATGGCTCT TTTGGCACAG 781 CTGAGATGTT GAATTACTCC GTTAATATAT ACGATGATGG AAACCTGCTC TCCATTGTGA 841 CCAGCGGAGG AGCTCATGGG ACACATGTAG CTAGTATAGC TGCTGGACAC TTTCCAGAAG 901 AACCTGAACG GAATGGGGTA GCTCCTGGTG CTCAAATTCT TTCCATCAAG ATTGGTGATA 961 CAAGACTAAG CACAATGGAA ACAGGCACAG GCCTCATAAG AGCTATGATA GAAGTTATAA 1021 ATCATAAGTG TGATCTTGTC AACTACAGTT ACGGAGAAGC AACTCACTGG CCAAATTCTG 1081 GGAGAATTTG TGAAGTAATT AATGAAGCAG TATGGAAGCA TAATATAATT TATGTTTCAA 1141 GTGCTGGAAA TAATGGTCCA TGCCTGTCTA CAGTTGGTTG TCCAGGTGGA ACTACATCAA 1201 GTGTGATAGG TGTTGGTGCT TATGTTTCTC CTGATATGAT GGTTGCTGAG TATTCACTGA 1261 GAGAGAAATT ACCTGCAAAT CAATATACTT GGTCTTCTAG AGGACCTAGT GCTGACGGGG 1321 CCCTTGGTGT GAGTATCAGT GCGCCAGGAG GAGCCATTGC TTCTGTTCCT AACTGGACAC 1381 TGAGAGGGAC GCAGCTGATG AATGGAACAT CTATGTCTTC CCCCAATGCA TGTGGAGGCA 1441 TTGCCCTGAT CCTTTCAGGT CTGAAAGCTA ATAACATTGA CTACACAGTT CATTCAGTCA 1501 GAAGAGCTCT AGAAAACACT GCAGTGAAGG CTGACAATAT AGAAGTATTT GCTCAAGGAC 1561 ATGGTATTAT TCAGGTTGAT AAAGCCTATG ACTACCTCGT TCAGAATACA TCATTTGCTA 1621 ATAAATTAGG TTTTACTGTT ACTGTTGGAA ATAACCGTGG CATCTACCTC CGAGATCCTG 1681 TTCAGGTGGC TGCACCTTCA GATCATGGCG TTGGCATTGA ACCTGTATTT CCGGAGAACA 1741 CAGAAAACTC TGAAAAAATA TCCCTTCAGC TTCATTTAGC TCTGACTTCA AATTCATCTT 1801 GGGTTCAGTG TCCCAGCCAT TTGGAACTCA TGAATCAATG TAGACACATA AACATACGTG 1861 TGGATCCCAG GGGCTTAAGA GAAGGATTGC ATTATACAGA GGTATGTGGC TATGATATAG 1921 CATCCCCTAA CGCAGGTCCG CTCTTCAGAG TTCCGATCAC TGCAGTTATA GCAGCAAAAG 1981 TAAATGAATC ATCACATTAT GATCTAGCCT TTACAGATGT ACACTTTAAA CCTGGTCAAA 2041 TTCGAAGGCA TTTTATTGAG GTTCCTGAGG GTGCAACATG GGCTGAAGTG ACAGTGTGTT 2101 CGTGTTCTTC TGAGGTGTCA GCAAAGTTTG TTCTACATGC AGTCCAGCTT GTGAAGCAAA 2161 GAGCATATCG AAGCCATGAA TTCTATAAGT TTTGTTCTCT TCCAGAGAAA GGAACACTGA 2221 CTGAAGCTTT TCCTGTCCTA GGTGGAAAAG CAATTGAATT TTGCATTGCT CGTTGGTGGG 2281 CAAGTCTCAG TGATGTCAAC ATTGATTATA CCATTTCTTT CCATGGGATA GTGTGTACTG 2341 CTCCTCAGTT AAACATTCAT GCATCGGAAG GAATCAACCG CTTTGATGTT CAGTCCTCCT 2401 TGAAATACGA AGATCTGGCT CCCTGCATAA CTTTGAAGAA CTGGGTCCAA ACACTGCGCC 2461 CAGTGAGTGC AAAAACAAAA CCTTTAGGAT CAAGAGATGT TTTGCCAAAT AACCGTCAAC 2521 TTTATGAGAT GGTCCTGACA TATAACTTTC ATCAACCCAA GAGTGGGGAA GTAACTCCAA 2581 GCTGCCCACT ACTTTGTGAA CTATTATATG AATCTGAATT TGACAGCCAA CTGTGGATTA 2641 TTTTTGACCA GAACAAAAGA CAGATGGGTT CAGGCGATGC CTATCCACAT CAGTATTCTT 2701 TGAAACTGGA GAAAGGAGAT TATACAATTC GACTACAGAT TCGCCATGAG CAAATCAGTG 2761 ATTTGGAACG CCTTAAAGAC CTTCCATTTA TTGTTTCTCA TAGATTGTCT AATACCTTGA 2821 GCTTAGATAT TCATGAAAAT CATAGTTTTG CACTTCTAGG GAAGAAGAAA TCAAGCAATT 2881 TGACATTACC ACCCAAATAT AACCAGCCAT TCTTTGTTAC TTCCTTACCT GATGATAAAA 2941 TACCTAAAGG GGCAGGACCT GGATGCTATC TTGCAGGATC CTTAACATTG TCAAAGACTG 3001 AACTAGGAAA GAAAGCTGAT GTAATCCCTG TTCATTACTA CTTAATACCT CCACCAACAA 3061 AGACTAAGAA TGGCAGCAAA GATAAGGAAA AAGATTCAGA AAAAGAGAAA GATTTAAAAG 3121 AAGAGTTTAC TGAAGCATTA CGAGATCTTA AAATTCAGTG GATGACAAAG CTGGATTCTA 3181 GTGACATTTA TAACGAATTG AAAGAAACAT ATCCTAATTA TCTTCCTCTG TACGTTGCAC 3241 GACTTCATCA ATTGGATGCT GAAAAGGAAC GAATGAAAAG ACTTAATGAA ATTGTTGATG 3301 CGGCAAATGC TGTTATTTCT CATATAGATC AAACAGCCCT AGCAGTTTAT ATTGCAATGA 3361 AGACTGATCC CAGGCCTGAT GCAGCTACTA TAAAAAATGA CATGGACAAA CAAAAATCCA 3421 CCCTCGTAGA TGCCCTTTGT AGGAAAGGTT GTGCCCTGGC AGACCATCTT CTTCACACCC 3481 AGGCTCAAGA CGGAGCCATT TCCACTGATG CAGAAGGAAA GGAGGAGGAA GGAGAAAGTC 3541 CTTTGGATTC TCTGGCAGAA ACATTTTGGG AAACTACTAA ATGGACTGAT CTCTTTGACA 3601 ATAAGGTTTT GACATTTGCA TATAAACATG CATTAGTAAA TAAAATGTAT GGGAGAGGCC 3661 TTAAATTTGC AACTAAACTT GTGGAAGAAA AACCAACAAA AGAAAACTGG AAAAATTGTA 3721 TTCAACTGAT GAAGTTACTT GGATGGACCC ATTGTGCATC TTTTACTGAA AACTGGCTCC 3781 CCATCATGTA TCCTCCCGAT TATTGCGTAT TCTACCCAAC TTTCTTGTAC AAAGTtggca 3841 ttataagaaa gcattgctta tcaatttgtt gcaacgaac