Construct: ORF ccsbBroadEn_07116
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010740.1_s300c1, BRDN0000397377
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UPK1B (7348)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7348 | UPK1B | uroplakin 1B | NM_006952.4 | 99.8% | 99.6% | 338A>G |
| 2 | mouse | 22268 | Upk1b | uroplakin 1B | NM_178924.4 | 87.5% | 91.1% | (many diffs) |
| 3 | mouse | 22268 | Upk1b | uroplakin 1B | XM_017316943.1 | 87.5% | 91.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 846
- ORF length:
- 780
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CAAAGACAAC TCAACTGTTC GTTGCTTCCA GGGCCTGCTG ATTTTTGGAA 121 ATGTGATTAT TGGTTGTTGC GGCATTGCCC TGACTGCGGA GTGCATCTTC TTTGTATCTG 181 ACCAACACAG CCTCTACCCA CTGCTTGAAG CCACCGACAA CGATGACATC TATGGGGCTG 241 CCTGGATCGG CATATTTGTG GGCATCTGCC TCTTCTGCCT GTCTGTTCTA GGCATTGTAG 301 GCATCATGAA GTCCAGCAGG AAAATTCTTC TGGCGTATTT CATTCTGATG TTTATAGTAT 361 ATGCCTTTGA AGTGGCATCT TGTATCACAG CAGCAACACA ACGAGACTTT TTCACACCCA 421 ACCTCTTCCT GAAGCAGATG CTAGAGAGGT ACCAAAACAA CAGCCCTCCA AACAATGATG 481 ACCAGTGGAA AAACAATGGA GTCACCAAAA CCTGGGACAG GCTCATGCTC CAGGACAATT 541 GCTGTGGCGT AAATGGTCCA TCAGACTGGC AAAAATACAC ATCTGCCTTC CGGACTGAGA 601 ATAATGATGC TGACTATCCC TGGCCTCGTC AATGCTGTGT TATGAACAAT CTTAAAGAAC 661 CTCTCAACCT GGAGGCTTGT AAACTAGGCG TGCCTGGTTT TTATCACAAT CAGGGCTGCT 721 ATGAACTGAT CTCTGGTCCA ATGAACCGAC ACGCCTGGGG GGTTGCCTGG TTTGGATTTG 781 CCATTCTCTG CTGGACTTTT TGGGTTCTCC TGGGTACCAT GTTCTACTGG AGCAGAATTG 841 AATATTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 901 gttgcaacga ac